Gene detail information of Glyur001223s00024756.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G06860.13.00E-47multifunctional protein 2
NRXP_002516946.13.22E-74conserved hypothetical protein [Ricinus communis]
COGYP_618105.15.00E-283-hydroxyacyl-CoA dehydrogenase [Sphingopyxis alaskensis RB2256]
Swissprottr|Q39659|MFPA_CUCSA3.00E-683-hydroxyacyl-CoA dehydrogenase
trEMBLtr|B9RT77|B9RT77_RICCO1.00E-74Putative uncharacterized protein {ECO:0000313|EMBL:EEF45560.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold012237993681873+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10527MFP2 EC:4.2.1.17 1.1.1.35 1.1.1.211 Fatty acid metabolism map01212
Fatty acid degradationmap00071
alpha-Linolenic acid metabolismmap00592


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001223s00024756.1PF00378.15ECH561899.60E-34


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control31.214
SRR1783600control30.830
SRR1783602moderate drought stress20.778
SRR1811619moderate drought stress20.213

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain30.148
DRR006520Root Summer glycyrrhizin high producing strain29.597
DRR006521Root Winter glycyrrhizin high producing strain3.682
DRR006522Root Winter glycyrrhizin high producing strain3.434
DRR006523Root Summer glycyrrhizin low producing strain22.879
DRR006524Root Summer glycyrrhizin low producing strain22.536
DRR006525Leaf Summer glycyrrhizin high producing strain14.707
DRR006526Leaf Summer glycyrrhizin high producing strain15.004

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)40.625
SRR2868004Drought Stress(Tissue:root)37.103
SRR2967015Control (Tissue:root)41.371

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.037
SRR9715740Leave11.090
SRR9715741Leave15.626
SRR9715739Root6.041
SRR9715742Root35.680
SRR9715743Root24.880

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.015
SRR8749028MeJA induced 9h43.501
SRR8749029MeJA induced 9h9.326
SRR8749030Uninduced6.235
SRR8749031Uninduced4.088
SRR8749032Uninduced2.245

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root48.021
SRR8400027Control-Root46.090

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved