Gene detail information of Glyur001224s00023137.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G54850.10plant U-box 14
NRXP_004496239.10PREDICTED: U-box domain-containing protein 14-like [Cicer arietinum]
COGYP_001957542.19.00E-16hypothetical protein Aasi_0393 [Candidatus Amoebophilus asiaticus 5a2]
Swissprottr|Q8VZ40|PUB14_ARATH0U-box domain-containing protein 14
trEMBLtr|I1NHI3|I1NHI3_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G32340.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold012242045824320+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU_box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0016567  protein ubiquitination


molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005488  binding

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001224s00023137.1PF04564.10U-box2473171.90E-21
Glyur001224s00023137.1PF00514.18Arm3744132.50E-11
Glyur001224s00023137.1PF00514.18Arm4574959.50E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.386
SRR1783600control6.414
SRR1783602moderate drought stress7.997
SRR1811619moderate drought stress8.010

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.448
DRR006520Root Summer glycyrrhizin high producing strain12.136
DRR006521Root Winter glycyrrhizin high producing strain39.510
DRR006522Root Winter glycyrrhizin high producing strain37.641
DRR006523Root Summer glycyrrhizin low producing strain19.277
DRR006524Root Summer glycyrrhizin low producing strain19.169
DRR006525Leaf Summer glycyrrhizin high producing strain11.016
DRR006526Leaf Summer glycyrrhizin high producing strain10.901

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)31.934
SRR2868004Drought Stress(Tissue:root)45.819
SRR2967015Control (Tissue:root)45.139

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave33.520
SRR9715740Leave28.054
SRR9715741Leave40.147
SRR9715739Root3.234
SRR9715742Root12.870
SRR9715743Root10.908

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h25.229
SRR8749028MeJA induced 9h34.877
SRR8749029MeJA induced 9h27.032
SRR8749030Uninduced35.299
SRR8749031Uninduced49.583
SRR8749032Uninduced29.981

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root24.116
SRR8400027Control-Root19.808

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved