Gene detail

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Gene detail information of Glyur001224s00023143.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G10370.1	0	FAD-dependent oxidoreductase family protein
NR	XP_004496236.1	0	PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial-like [Cicer arietinum]
COG	YP_004367519.1	9.00E-164	glycerol-3-phosphate dehydrogenase [Marinithermus hydrothermalis DSM 14884]
Swissprot	tr\|Q9SS48\|SDP6_ARATH	0	Glycerol-3-phosphate dehydrogenase SDP6, mitochondrial (Precursor)
trEMBL	tr\|I1LCX0\|I1LCX0_SOYBN	0	Glycerol-3-phosphate dehydrogenase {ECO:0000256\|RuleBase:RU361217}

Sequence

Transcript Sequence

>Glyur001224s00023143.1
ATGACATGGGTGAAAAAGCTAGGCGCCGCAGTCGGAGCAGGCATCGTCACCGCGTACGGCGGCGCAGTGATCCTTCACAGTTTTTCCATCNCCGCCAACGACTACGGAGGCGGTTCCCGCCTCGAGGCTCTCCGGAAGAGGGTGCACGATCCGGACGCCGTCGTTCCGTCGAGGGAGGTGCAGCAGTCGGCGCTGATGGCAGCCGGAAAGGCGGATCCTCTCGACGTTCTCGTCATCGGCGGCGGCGCCACTGGTTCCGGCGCCACGCTCGACGCCGTGACGCGGGGACTCCGGGTTGGCCTCGTGGAGCGGGAGGATTTCGCTTCCGGAACTTCGTCTAGATCNACGAAGCTCCTTCACGGAGGCGTTCGTTACTTGGAAAAAGCTGTCTTTAACCTTGACTACGGACAATTCAAGTTAGTGCTTCATGCACTTGAGGAGCGTAAACAGGTTATTGACAATGCACCACACCTATGCCATGCATTGCCATGCATGACACCATGTTTTAACTGGTTTGAAGTAGTGTACTACTGGATGGGCTTGAAAATGTACGATTTGGTCGCAGGAAGACAACTGCTGCACATATCAAGATATTATTCCACAAAAGAGTCTGCTGAGCTCTTTCCCACTCTGGCAAGGGAGGGAAAGGATAGAAGCCTAAGGGGAACAGTTGTTTATTATGATGGGCAGATGAATGATTCACGGCTTAATGTTGGATTGGCTTGCACTGCTGCTTTAGCTGGTGCAGCAGTGCTTAACCATGCAGAAGTGGTATCCTTACTGAAGGATGATGCTGGAAAACGGATAATTGGTGCACGAATTCGGGACAATTTAACTGGCAGAGAGTTTGATACATATGCAAAAGTGATTGTGAATGCAAGTGGACCATTTTGTGACTCTTTAAGGAAAATGGCCTACAATAATGCACAAGAAATGATTGCTCCTAGCAGTGGTGTACATATTATACTCCCTGATTATTATTCTCCTGAGGGAATGGGCTTAATTGTTCCCAAAACTAAGGATGGACGTGTTGTTTTCATGCTTCCATGGCTGGGACGAACCATTGCTGGAACAACAGATTCTAGTACTAGTATTACTTATCTTCCAGAACCGCATGAAGATGAAATACAATTTATATTGGATGCCATATCTGATTACCTTAATGTTAAAGTTCGCCGCACTGATGTTCTTTCTGCTTGGAGTGGCATTCGCCCTTTAGCAGTGGACCCAACAGCAAAAAATACTGAGAGTATCTCAAGGGATCATGTTGTCTGTGAGGATTACCCTGGTTTGGTCACCATCACTGGTGGCAAGTGGACTACATATCGTAGCATGGCAGAAGATGCTGTTAATGCAGCTATAAAGTCTGGGAAGCTGACTCCCACCAATGGATGTTTGACTAACAAACTCTGCATTGTTGGTGGTGAAGGGTGGGATCCTTCTTCTTTCACAGTGCTTGCTCAACAGTATAAGCGCATGAAAAGTACATACGGTGGTAAAGTTGTTCCTGGGGTAATGGACACTGCTGCTGCAAAGCATTTGTCTCGTGCATATGGAACAACGGCTGAGCGTGTGGCTACCATTGCTCAGAATGAAAATTTGGGTAAGCGACTTGCCCACGGTTACCCATATCTGGAGGCAGAGGTGGCCTACTGTGCTCGTAATGAATATTGTGAATCTGCTATTGATTTCATTGCAAGGAGGACTCGTCTTGCTTTCCTTGAAACTGATGCAGCAAGAAGGGCATTGCCTCGTGTGATTGAAATATTGGCAAATGAGCACAAATGGGACAATTCAAGACAGGAGGAAGAGTTGCACAAGGCTACAGATTTTTTGAAGACTTTTAAATCCTCAAAAAATGCTCAGTTTCATGATGGGAAACACAAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01224	69513	75125	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00111	glpA, glpD	EC:1.1.5.3	Glycerophospholipid metabolism	map00564

Gene Ontology

biological_process

GO:0006072 glycerol-3-phosphate metabolic process

GO:0055114 oxidation-reduction process

cellular_component GO:0009331 glycerol-3-phosphate dehydrogenase complex molecular_function GO:0004368 glycerol-3-phosphate dehydrogenase activity GO:0016491 oxidoreductase activity "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001224s00023143.1	PF01266.19	DAO	75	437	3.30E-43

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.249
SRR1783600	control	0.253
SRR1783602	moderate drought stress	0.040
SRR1811619	moderate drought stress	0.038

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.113
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.058
DRR006524	Root Summer glycyrrhizin low producing strain	0.058
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.734
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.588

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.160
SRR2868004	Drought Stress(Tissue:root)	0.788
SRR2967015	Control (Tissue:root)	0.353

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.602
SRR9715740	Leave	0.349
SRR9715741	Leave	0.877
SRR9715739	Root	0.090
SRR9715742	Root	0.356
SRR9715743	Root	0.295

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.075
SRR8749028	MeJA induced 9h	0.162
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.305
SRR8749031	Uninduced	0.630
SRR8749032	Uninduced	0.249

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.808
SRR8400027	Control-Root	0.537