Gene detail information of Glyur001226s00038349.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G55830.1 | 1.00E-123 | Nucleotide-diphospho-sugar transferases superfamily protein |
| NR | XP_003519384.1 | 0 | PREDICTED: exostosin-2-like [Glycine max] |
| Swissprot | tr|Q9LY62|GT644_ARATH | 7.00E-162 | Glycosyltransferase family 64 protein C4 {ECO:0000303|PubMed:24905498} |
| trEMBL | tr|I1JI68|I1JI68_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G42230.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01226 | 13477 | 18049 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT64 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001226s00038349.1 | PF09258.5 | Glyco_transf_64 | 71 | 324 | 1.90E-85 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.687 |
| SRR1783600 | control | 5.054 |
| SRR1783602 | moderate drought stress | 4.794 |
| SRR1811619 | moderate drought stress | 4.788 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.377 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.366 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.529 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 20.133 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.151 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.107 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.721 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.586 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.724 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.524 |
| SRR2967015 | Control (Tissue:root) | 7.297 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.275 |
| SRR9715740 | Leave | 9.329 |
| SRR9715741 | Leave | 6.128 |
| SRR9715739 | Root | 2.845 |
| SRR9715742 | Root | 3.901 |
| SRR9715743 | Root | 4.277 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.231 |
| SRR8749028 | MeJA induced 9h | 31.347 |
| SRR8749029 | MeJA induced 9h | 28.200 |
| SRR8749030 | Uninduced | 20.416 |
| SRR8749031 | Uninduced | 33.482 |
| SRR8749032 | Uninduced | 29.111 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.301 |
| SRR8400027 | Control-Root | 8.793 |