Gene detail information of Glyur001230s00027572.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G69400.1 | 7.00E-62 | Transducin/WD40 repeat-like superfamily protein |
| NR | AES96908.2 | 1.22E-140 | transducin/WD40 repeat protein [Medicago truncatula] |
| COG | YP_007202716.1 | 4.00E-07 | WD40 repeat-containing protein [Singulisphaera acidiphila DSM 18658] |
| Swissprot | tr|F4I241|BUB33_ARATH | 7.00E-75 | Mitotic checkpoint protein BUB3.3 |
| trEMBL | tr|G7JWN6|G7JWN6_MEDTR | 5.00E-141 | Transducin/WD40 repeat protein {ECO:0000313|EMBL:AES96908.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01230 | 29008 | 39776 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001230s00027572.1 | PF00400.27 | WD40 | 23 | 54 | 0.013 |
| Glyur001230s00027572.1 | PF00400.27 | WD40 | 160 | 192 | 0.13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.164 |
| SRR1783600 | control | 3.045 |
| SRR1783602 | moderate drought stress | 4.407 |
| SRR1811619 | moderate drought stress | 4.458 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.107 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.454 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.696 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.849 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.162 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.496 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.390 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.936 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.888 |
| SRR2967015 | Control (Tissue:root) | 3.160 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.273 |
| SRR9715740 | Leave | 1.416 |
| SRR9715741 | Leave | 2.610 |
| SRR9715739 | Root | 2.729 |
| SRR9715742 | Root | 3.019 |
| SRR9715743 | Root | 3.866 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.976 |
| SRR8749028 | MeJA induced 9h | 6.623 |
| SRR8749029 | MeJA induced 9h | 4.891 |
| SRR8749030 | Uninduced | 0.848 |
| SRR8749031 | Uninduced | 0.605 |
| SRR8749032 | Uninduced | 1.391 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.932 |
| SRR8400027 | Control-Root | 5.876 |