Gene detail information of Glyur001232s00031531.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G40250.1 | 3.00E-91 | RING/U-box superfamily protein |
| NR | XP_007151106.1 | 0 | hypothetical protein PHAVU_004G018400g [Phaseolus vulgaris] |
| Swissprot | tr|Q9FL07|ATL46_ARATH | 2.00E-145 | RING-H2 finger protein ATL46 |
| trEMBL | tr|V7C2H6|V7C2H6_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW23101.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01232 | 33998 | 35230 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001232s00031531.1 | PF13639.1 | zf-RING_2 | 168 | 211 | 7.10E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 71.570 |
| SRR1783600 | control | 72.176 |
| SRR1783602 | moderate drought stress | 70.895 |
| SRR1811619 | moderate drought stress | 69.655 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 78.883 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 83.005 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.022 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.504 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 79.314 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 75.195 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.830 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.035 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 37.175 |
| SRR2868004 | Drought Stress(Tissue:root) | 32.123 |
| SRR2967015 | Control (Tissue:root) | 42.025 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 14.449 |
| SRR9715740 | Leave | 20.780 |
| SRR9715741 | Leave | 16.825 |
| SRR9715739 | Root | 21.630 |
| SRR9715742 | Root | 26.530 |
| SRR9715743 | Root | 28.846 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.474 |
| SRR8749028 | MeJA induced 9h | 10.935 |
| SRR8749029 | MeJA induced 9h | 5.655 |
| SRR8749030 | Uninduced | 4.122 |
| SRR8749031 | Uninduced | 0.879 |
| SRR8749032 | Uninduced | 1.084 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 32.318 |
| SRR8400027 | Control-Root | 29.419 |