Gene detail information of Glyur001233s00029980.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G17180.1 | 7.00E-68 | glutathione S-transferase TAU 25 |
| NR | XP_004500375.1 | 3.69E-140 | PREDICTED: probable glutathione S-transferase parA-like [Cicer arietinum] |
| COG | YP_001868965.1 | 7.00E-24 | glutathione S-transferase domain-containing protein [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|P25317|GSTXA_TOBAC | 8.00E-110 | Probable glutathione S-transferase parA |
| trEMBL | tr|I3S5Q9|I3S5Q9_MEDTR | 4.00E-140 | Uncharacterized protein {ECO:0000313|EMBL:AFK35601.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01233 | 15481 | 16855 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001233s00029980.1 | PF13417.1 | GST_N_3 | 8 | 80 | 5.10E-15 |
| Glyur001233s00029980.1 | PF00043.20 | GST_C | 107 | 196 | 6.30E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.307 |
| SRR1783600 | control | 0.384 |
| SRR1783602 | moderate drought stress | 2.009 |
| SRR1811619 | moderate drought stress | 2.160 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.708 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.679 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.991 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.935 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.101 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.333 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 108.975 |
| SRR2868004 | Drought Stress(Tissue:root) | 201.323 |
| SRR2967015 | Control (Tissue:root) | 76.565 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 8.021 |
| SRR9715740 | Leave | 11.345 |
| SRR9715741 | Leave | 5.016 |
| SRR9715739 | Root | 2.691 |
| SRR9715742 | Root | 0.092 |
| SRR9715743 | Root | 0.798 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 88.257 |
| SRR8749028 | MeJA induced 9h | 739.067 |
| SRR8749029 | MeJA induced 9h | 362.931 |
| SRR8749030 | Uninduced | 428.277 |
| SRR8749031 | Uninduced | 572.450 |
| SRR8749032 | Uninduced | 388.321 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 29.610 |
| SRR8400027 | Control-Root | 12.971 |