Gene detail information of Glyur001233s00029986.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G30470.10high-level expression of sugar-inducible gene 2
NRKHN18657.10B3 domain-containing transcription repressor VAL1 [Glycine soja]
Swissprottr|Q8W4L5|VAL1_ARATH0B3 domain-containing transcription repressor VAL1
trEMBLtr|K7MQ28|K7MQ28_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G05840.3}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold012334370250299+


Gene family

Gene familysubfamily
Transcription Factors FamilyB3
EAR motif-containing ProteinsB3


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001233s00029986.1PF02362.16B33404401.80E-16
Glyur001233s00029986.1PF07496.10zf-CW6096526.30E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.226
SRR1783600control10.218
SRR1783602moderate drought stress7.252
SRR1811619moderate drought stress7.293

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.609
DRR006520Root Summer glycyrrhizin high producing strain6.517
DRR006521Root Winter glycyrrhizin high producing strain6.405
DRR006522Root Winter glycyrrhizin high producing strain6.232
DRR006523Root Summer glycyrrhizin low producing strain5.954
DRR006524Root Summer glycyrrhizin low producing strain5.989
DRR006525Leaf Summer glycyrrhizin high producing strain11.516
DRR006526Leaf Summer glycyrrhizin high producing strain11.329

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)16.492
SRR2868004Drought Stress(Tissue:root)17.508
SRR2967015Control (Tissue:root)18.528

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave19.307
SRR9715740Leave26.401
SRR9715741Leave15.138
SRR9715739Root2.249
SRR9715742Root7.039
SRR9715743Root7.277

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.857
SRR8749028MeJA induced 9h22.594
SRR8749029MeJA induced 9h7.155
SRR8749030Uninduced12.751
SRR8749031Uninduced10.079
SRR8749032Uninduced6.346

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.399
SRR8400027Control-Root11.969

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved