Gene detail

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Gene detail information of Glyur001233s00029987.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G39950.1	2.00E-155	cytochrome P450, family 79, subfamily B, polypeptide 2
NR	KEH34365.1	0	cytochrome P450 family protein [Medicago truncatula]
COG	YP_007126612.1	1.00E-24	Unspecific monooxygenase [Gloeocapsa sp. PCC 7428]
Swissprot	tr\|Q6J540\|C79D4_LOTJA	0	Isoleucine N-monooxygenase 2
trEMBL	tr\|A0A072V898\|A0A072V898_MEDTR	0	Cytochrome P450 family protein {ECO:0000313\|EMBL:KEH34365.1}

Sequence

Transcript Sequence

>Glyur001233s00029987.1
ATGGACTATCATATTGTCCTTCGTTTTCTCTATTCATATTTTCNATATTCCTCCTTTAATATTTCCTTATTTATTGCGACTTTTGGCTTTATGATTATCAAAGCCTTGAGATATCACTCNAGTGTGAAGTCCAAAAACCCCAAACTGCCCCCAGGTCCCAAACCATGGCCAATAGTTGGTAATCTTCCTGAAATGCTTGCAAACAAGCCTGCATTTCNGTGGATACACAAAATGATGGAAGAAATGAACACAGAAATAGCATGCATCCGCCTAGGAAATGTCCATGTAATCCCTGTGACTTGCCCCACCATTGCCCGTGAATTCTTGAGAAAACATGATGCTGCTTTTGCATCAAGACCNATAACCATGGCTACTGATATTATCAGCAATGGTTATTTGACAACGGCTCTTACACCCTTTGGGGAGCAATGGAAGAANATGAAGAAAATCTTTGTCAACGAATTGCTCNCCCCACTAAGGCATCAATGGCTTCAAGACAAAAGGAATGAAGAAGCTAATAACCTTTTGTTTTATGTCTACAACAAATGTAACAATAATGTGAATGATGGTGGTGGCCTTGTGAATGTTAGGATTGCTGCACAACATTATTGTGGTAATGTGTTTAGGAAATTGGTTTTTAATACGAGGTACTTTGGAGAGGGTAGGAAGGATGGAGGGCCTGGTTCTGAGGAAACAGAACATGTAGATGCTGCTTTTGTGTTGCTTAAGTACATTTATGCCTTCTCTGTTTCTGATTATATCCCTTGCTTGAGGGGTACTTTTGACTTTGATGGACACGAGAGCAAGGTGAAAAATGCAATGAGGATAGTGGACAAGTATCATGATCCCATCATTGAAGAGAAAATCAAGCAGTGGAGTGATGGGTCAGAAGAGGACTTGCTGGATGTTCTGATCTCATTGAAAGATCCCAATAATAACCCATTATTGGCATTGAAGGAAATCAAGGCACAAATAACAGAAATAATGATTGNAGTGGTAGACAATCCATCAAATGCTGTTGAATGGGCACTAGCAGAAATGATAAATCAGCCTGAGTTGCTTCAAAAAGCCANAGAAGAACTAGACAACATAGTTGGAAAAAACAGGCTGGTCCAAGAATCAGATATTCCTAAGCTCAACTTTGTGAAGGCATGTGCGAGAGAAGCTTTTCGCCTCCATCCCATGGTGGCTTTCAATGTTCCCCATGTCTCCANGAGTGACACAATGGTTGGAAATTACACGATACCAAAGGGTAGTCACGTATTGCTAAGCAGAATTGGTCTCGGGAGAAACCCAAAAGTTTGGAGTGAACCCCACAAGTTCAAACCAGAACGCCATCTCAAGAATATTGATGATGGGTCATATGATAATGTAGTTTTGACAGAGCCAGAANTGAGGTTCATATCATTTAGCACAGGAAGGCGTAGTTGTCCTGGTGTGATGCTTGGCACCACAATGACTGTAATGTTGTTGGCTAGATTGCTCCATGGCTTCACTTGGACTTCACCTCCCAATGTATCAAGCATCGATCTTGCTGAGTCCAAAGGGGATATGCTCCTTGCTGAGCCACTTGTGGCAGTAGCAAAGCCAAGATTAGCAGCAGAATTCCTTATATATATCATTGAATTGTTCAAAAGCCCAGGAAACCCAAACTGCCCTAATTCGTTCCTGAAACCATGGCCCTATACCTTGAGATATCACTCAAGTGTGAAGTCCAAAAACCCCAAACTGCCCCCGGGTCCCAAACCATGGCCAATAGTTGGTAATCTTCCTGAAATGCTTGCAAACAAGCCTGTATTTCAGTGGATACACAAAATTATGAAAGAAATGAACACAGAAATAGCATGCATCCGCCTAGGAAATGTCCATGTAATCCCTGTGACTTGCCCCACCATTGCTCTTGAATTCTTNAGAAAACATGATGCTGTTTTTGCATCAAGACCCATAACCATGGCCTCCCATATTATCAGCGACGGTTATTTGACCGCAGCTGTTACACCCTTTGGGGAGCAATGGAAGAAAATGAAGAAAATCTTTGTCAACGATTTGCTCTCTCCCCACAAGCATCAATGGCTTCAAGACAAAAGGAATGAAGAAGCCAATAACCTTTTGTTTTATGTCTACAACAAATGTAACAACAATGTGAATGATGGTGGCCTTGTGAATGTGAAAAATGCAATGAGAACAATGGAGAAGTATCATGATCCCATCATTGAAGAGAGAATCAAGCAGTGGAGTGATGGATCACAGACCATTGAAGAGGACTTGTTGGATGTGATGATCACACTGAAAGGTGTCAATAATAACCCATTATTGACATTGAAGGAAATCAAGGCGCAAAATTTCATGCCTGCAATCGTGGACAATCCATCAAATGCTGTTGAATGGACACTGGCAGAAATGATAAATCAACCCGAGTTGCTTCAACAAGCCACAGAAGAGTTGGACAATGTAGTTGGAAAAAATAGGCTGGTCCAAGAATCAGATATTCCTAAGCTCAACTTTGTGAAGGCTTGTGTAAGAGAAGCTTTTCGCCTCCATCCTGTAGCAGCTTTCAATATACCCCATGTCTCCATGAGTGACACTATGGTTGGAAATTACACGATACCAAAGGGTAGTCACGTATTGCTAAGCAGAATTGGTCTCGGGAGGAACCCAAAAGTTTGGAGTGAACCCCATAAGTTCAAACCAGAACGCCATCTCAAGAATATTGATGATGGGTCATATGATAATGTAGTTTTGACAGAGCCAGAATTGAGGTTCATATCATTTAGCACAGGAAGGCGTAGTTGTCCTGGTGTGATGCTTGGCACCACAATGACTGTAATGTTGTTGGCTAGATTGCTCCATGGCTTCACTTGGACTTCACCTCCCAATGTATCAAGCATCGATCTTGCTGAGTCCAAAGGGGATATGCTCCTTGCTGAACCACTTGTGGCAGTAGCAAAGCCAAGATTAGCAGCAGAACTATGGATACAAAATCTAATGAACAATCTCGACACAGAAATTGCATGCATCCGTTTGGGTAACAACATTCATGTCATCCCAGTGACAAGCCCTGAAATTGCACGTGAATTCTTGATAAAACATGACACAGTTTTTGCATCAAGGCCCATGAATTGGTCCAGTGAGCACGTATCCGGTGGATATTTGACCACAGCTCTCGTGCCCTTTGGAGAACAATGGAAGAAAATGAAGAAAGTCATCAGCAACGACTTGCTCTCACCCCTCAAGCATCAATGGCTTCATGACAAGAGGGTGGAAGAAGCTGATAACCTTGTACGTTATGTTTATAACCAATGCAAAATTGGTGGTGGCCTTGTGAATGTGAAGTACTTCGGAAAGGGTAGTGAAGATGGAGGACCTGGCTTAGAGGAAGTGGAGCATGTACATGCACTTTTCACTGTGTTGAAGTACCTCTTTGCCTTTTCGATTTCTGATTACGTGTCATGCTTGAGGGGTCTTGACTTGGATGGTCACAAAAGGAACGTGAAGGAGGCTTGTAAAGTGGTGAGGAAATATCATGATCCCATCATTGAGGATAGAATTCAACAATGGAATAATGGAGATAAAACACGTGAACAACAAGATTTGCTTGATGTTCTCATCTCACTCAAGGATGCTCATAACAATGCACTGTTGACCGTAGACGAAACTAAGTCTCAAATCATGGAAATGATGATTGCATCCATAACCATTGACAATCCATCGAATGCAGTGGAATGGGGACTCGCAGAGATGATAAATCAACCAGAGCTACTTAAAAAAGCCACTGAAGAATTGGACAGTGTGGTTGGCAAGGGGAGGTTAGTGCAAGAACATGATTTTCCCAAGCTCAACTATGTGAAGGCTTGTGCTAGAGAAGCGTTTCGCCTTCACCCCATTGTGGATTTTAACATTCCCCATGGTAGCCATGTTTTGTTAAGGAGACAAGGAATTGGCCAAAACCCAAGAGTTTGGAAAGAACCCCTCAAGTTCAAACCAGAACGACACCTTGTTAAGAGTAATGGATCCACGCTTAAGGACTTGATAACATTCAGCACTGGAAGGCGTGGGTGCCCAGGGCTCATGCTTGGAACAGCAATGACTGTTATGNTGTTTGCAAGGTTGTTGCATGGCTTCACTTGGAGTGTGCCACCCAACCAGAGTAGCATTGACCTCTCTGAATCTCNGAATGGTACCACCAAAGCTAAGCCACTTGTGGCATTCGCAAAGCCAAGGTTACCCCCAGAGGCTTATAAGTTCTAA

Protein Sequence

>Glyur001233s00029987.1
MDYHIVLRFLYSYFXYSSFNISLFIATFGFMIIKALRYHSSVKSKNPKLPPGPKPWPIVGNLPEMLANKPAFXWIHKMMEEMNTEIACIRLGNVHVIPVTCPTIAREFLRKHDAAFASRPITMATDIISNGYLTTALTPFGEQWKXMKKIFVNELLXPLRHQWLQDKRNEEANNLLFYVYNKCNNNVNDGGGLVNVRIAAQHYCGNVFRKLVFNTRYFGEGRKDGGPGSEETEHVDAAFVLLKYIYAFSVSDYIPCLRGTFDFDGHESKVKNAMRIVDKYHDPIIEEKIKQWSDGSEEDLLDVLISLKDPNNNPLLALKEIKAQITEIMIXVVDNPSNAVEWALAEMINQPELLQKAXEELDNIVGKNRLVQESDIPKLNFVKACAREAFRLHPMVAFNVPHVSXSDTMVGNYTIPKGSHVLLSRIGLGRNPKVWSEPHKFKPERHLKNIDDGSYDNVVLTEPEXRFISFSTGRRSCPGVMLGTTMTVMLLARLLHGFTWTSPPNVSSIDLAESKGDMLLAEPLVAVAKPRLAAEFLIYIIELFKSPGNPNCPNSFLKPWPYTLRYHSSVKSKNPKLPPGPKPWPIVGNLPEMLANKPVFQWIHKIMKEMNTEIACIRLGNVHVIPVTCPTIALEFXRKHDAVFASRPITMASHIISDGYLTAAVTPFGEQWKKMKKIFVNDLLSPHKHQWLQDKRNEEANNLLFYVYNKCNNNVNDGGLVNVKNAMRTMEKYHDPIIEERIKQWSDGSQTIEEDLLDVMITLKGVNNNPLLTLKEIKAQNFMPAIVDNPSNAVEWTLAEMINQPELLQQATEELDNVVGKNRLVQESDIPKLNFVKACVREAFRLHPVAAFNIPHVSMSDTMVGNYTIPKGSHVLLSRIGLGRNPKVWSEPHKFKPERHLKNIDDGSYDNVVLTEPELRFISFSTGRRSCPGVMLGTTMTVMLLARLLHGFTWTSPPNVSSIDLAESKGDMLLAEPLVAVAKPRLAAELWIQNLMNNLDTEIACIRLGNNIHVIPVTSPEIAREFLIKHDTVFASRPMNWSSEHVSGGYLTTALVPFGEQWKKMKKVISNDLLSPLKHQWLHDKRVEEADNLVRYVYNQCKIGGGLVNVKYFGKGSEDGGPGLEEVEHVHALFTVLKYLFAFSISDYVSCLRGLDLDGHKRNVKEACKVVRKYHDPIIEDRIQQWNNGDKTREQQDLLDVLISLKDAHNNALLTVDETKSQIMEMMIASITIDNPSNAVEWGLAEMINQPELLKKATEELDSVVGKGRLVQEHDFPKLNYVKACAREAFRLHPIVDFNIPHGSHVLLRRQGIGQNPRVWKEPLKFKPERHLVKSNGSTLKDLITFSTGRRGCPGLMLGTAMTVMXFARLLHGFTWSVPPNQSSIDLSESXNGTTKAKPLVAFAKPRLPPEAYKF

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01233	50886	70112	-

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP79B2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K12153	CYP79A2	EC:1.14.13.124	2-Oxocarboxylic acid metabolism	map01210
			Cyanoamino acid metabolism	map00460
			Glucosinolate biosynthesis	map00966

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function GO:0005506 iron ion binding GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001233s00029987.1	PF00067.17	p450	50	520	1.50E-74
Glyur001233s00029987.1	PF00067.17	p450	578	714	7.00E-09
Glyur001233s00029987.1	PF00067.17	p450	723	974	2.90E-55
Glyur001233s00029987.1	PF00067.17	p450	1004	1391	5.10E-50

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.121
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.116

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.000
SRR2868004	Drought Stress(Tissue:root)	0.000
SRR2967015	Control (Tissue:root)	0.010

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	8.787
SRR9715740	Leave	1.577
SRR9715741	Leave	2.493
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.014
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.013

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.007
SRR8400027	Control-Root	0.011