Gene detail information of Glyur001234s00026341.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G16390.10SNF2 domain-containing protein / helicase domain-containing protein
NRXP_004510995.10PREDICTED: transcriptional regulator ATRX homolog [Cicer arietinum]
COGYP_007319492.12.00E-31SNF2-related protein [Fibrella aestuarina BUZ 2]
Swissprottr|F4I8S3|CLSY3_ARATH1.00E-83SNF2 domain-containing protein CLASSY 3
trEMBLtr|K7LWL4|K7LWL4_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G36460.3}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold01234565611938+


Gene family

Gene familysubfamily
Transcription Factors FamilySNF2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10875RAD54L, RAD54 EC:3.6.4.- Homologous recombination map03440


Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001234s00026341.1PF00176.18SNF2_N3215979.80E-24
Glyur001234s00026341.1PF00271.26Helicase_C7007732.30E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.522
SRR1783600control6.596
SRR1783602moderate drought stress6.681
SRR1811619moderate drought stress6.722

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.679
DRR006520Root Summer glycyrrhizin high producing strain7.408
DRR006521Root Winter glycyrrhizin high producing strain3.236
DRR006522Root Winter glycyrrhizin high producing strain3.106
DRR006523Root Summer glycyrrhizin low producing strain6.700
DRR006524Root Summer glycyrrhizin low producing strain6.622
DRR006525Leaf Summer glycyrrhizin high producing strain4.020
DRR006526Leaf Summer glycyrrhizin high producing strain4.014

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)8.999
SRR2868004Drought Stress(Tissue:root)6.893
SRR2967015Control (Tissue:root)7.991

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.544
SRR9715740Leave4.179
SRR9715741Leave3.763
SRR9715739Root0.856
SRR9715742Root4.354
SRR9715743Root4.036

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.888
SRR8749028MeJA induced 9h6.993
SRR8749029MeJA induced 9h3.170
SRR8749030Uninduced2.790
SRR8749031Uninduced0.897
SRR8749032Uninduced0.704

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root9.946
SRR8400027Control-Root10.437

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved