Gene detail information of Glyur001234s00026345.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G16405.1 | 0 | Transducin/WD40 repeat-like superfamily protein |
| NR | XP_006592959.1 | 0 | PREDICTED: WD repeat-containing protein 13-like [Glycine max] |
| COG | YP_001869376.1 | 5.00E-14 | hypothetical protein Npun_F6147 [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|Q8W1K8|MUT11_CHLRE | 3.00E-10 | Protein Mut11 |
| trEMBL | tr|I1LVC6|I1LVC6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G36500.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01234 | 24941 | 31693 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001234s00026345.1 | PF00400.27 | WD40 | 287 | 322 | 4.10E-09 |
| Glyur001234s00026345.1 | PF00400.27 | WD40 | 519 | 555 | 0.00074 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.224 |
| SRR1783600 | control | 9.919 |
| SRR1783602 | moderate drought stress | 8.628 |
| SRR1811619 | moderate drought stress | 8.664 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.233 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.540 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.517 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.269 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.978 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.906 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.034 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 28.019 |
| SRR2868004 | Drought Stress(Tissue:root) | 23.357 |
| SRR2967015 | Control (Tissue:root) | 22.573 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 12.579 |
| SRR9715740 | Leave | 14.601 |
| SRR9715741 | Leave | 18.113 |
| SRR9715739 | Root | 2.107 |
| SRR9715742 | Root | 3.610 |
| SRR9715743 | Root | 4.937 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.692 |
| SRR8749028 | MeJA induced 9h | 15.485 |
| SRR8749029 | MeJA induced 9h | 9.873 |
| SRR8749030 | Uninduced | 11.472 |
| SRR8749031 | Uninduced | 6.290 |
| SRR8749032 | Uninduced | 6.850 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 20.062 |
| SRR8400027 | Control-Root | 18.843 |