Gene detail information of Glyur001234s00026349.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G12840.3 | 6.00E-28 | nuclear factor Y, subunit A1 |
| NR | XP_004510989.1 | 1.58E-162 | PREDICTED: nuclear transcription factor Y subunit A-9-like isoform X2 [Cicer arietinum] |
| Swissprot | tr|Q9LXV5|NFYA1_ARATH | 3.00E-38 | Nuclear transcription factor Y subunit A-1 |
| trEMBL | tr|A0A072TPE2|A0A072TPE2_MEDTR | 5.00E-158 | CCAAT-binding transcription factor {ECO:0000313|EMBL:KEH19086.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01234 | 55235 | 59680 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NF-YA |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001234s00026349.2 | PF02045.10 | CBFB_NFYA | 209 | 265 | 9.00E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 58.252 |
| SRR1783600 | control | 58.387 |
| SRR1783602 | moderate drought stress | 28.681 |
| SRR1811619 | moderate drought stress | 28.290 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.249 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.549 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.155 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.544 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.447 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.488 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.146 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.252 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 15.685 |
| SRR2868004 | Drought Stress(Tissue:root) | 42.693 |
| SRR2967015 | Control (Tissue:root) | 68.714 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.741 |
| SRR9715740 | Leave | 5.792 |
| SRR9715741 | Leave | 5.057 |
| SRR9715739 | Root | 42.018 |
| SRR9715742 | Root | 53.910 |
| SRR9715743 | Root | 51.316 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.841 |
| SRR8749028 | MeJA induced 9h | 3.355 |
| SRR8749029 | MeJA induced 9h | 2.334 |
| SRR8749030 | Uninduced | 1.795 |
| SRR8749031 | Uninduced | 0.503 |
| SRR8749032 | Uninduced | 0.826 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 69.840 |
| SRR8400027 | Control-Root | 61.832 |