Gene detail information of Glyur001235s00033384.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G08510.12.00E-153fatty acyl-ACP thioesterases B
NRXP_004507621.10PREDICTED: palmitoyl-acyl carrier protein thioesterase, chloroplastic-like [Cicer arietinum]
COGYP_006720699.12.00E-24acyl-CoA thioesterase [Geobacter metallireducens GS-15]
Swissprottr|Q9SQI3|FATB_GOSHI0Palmitoyl-acyl carrier protein thioesterase, chloroplastic (Precursor)
trEMBLtr|A9P5P1|A9P5P1_ARAHY0Acyl ACP-thioesterase {ECO:0000313|EMBL:ABO38554.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold012356074165097+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10781FATB EC:3.1.2.14 3.1.2.21 Fatty acid metabolism map01212
Fatty acid biosynthesismap00061


Gene Ontology

biological_process

GO:0006633  fatty acid biosynthetic process


molecular_function

GO:0016790  thiolester hydrolase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001235s00033384.1PF12590.3Acyl-thio_N11238.30E-51
Glyur001235s00033384.1PF01643.12Acyl-ACP_TE1343993.80E-114


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.263
SRR1783600control8.252
SRR1783602moderate drought stress6.573
SRR1811619moderate drought stress6.428

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.167
DRR006520Root Summer glycyrrhizin high producing strain6.948
DRR006521Root Winter glycyrrhizin high producing strain1.459
DRR006522Root Winter glycyrrhizin high producing strain1.406
DRR006523Root Summer glycyrrhizin low producing strain9.602
DRR006524Root Summer glycyrrhizin low producing strain9.831
DRR006525Leaf Summer glycyrrhizin high producing strain14.800
DRR006526Leaf Summer glycyrrhizin high producing strain14.706

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)22.209
SRR2868004Drought Stress(Tissue:root)17.909
SRR2967015Control (Tissue:root)15.936

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.795
SRR9715740Leave12.022
SRR9715741Leave13.647
SRR9715739Root9.885
SRR9715742Root11.275
SRR9715743Root11.650

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.499
SRR8749028MeJA induced 9h19.350
SRR8749029MeJA induced 9h9.635
SRR8749030Uninduced16.094
SRR8749031Uninduced6.398
SRR8749032Uninduced4.891

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root21.442
SRR8400027Control-Root21.800

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved