Gene detail

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Gene detail information of Glyur001237s00036949.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G25960.1	2.00E-132	P-glycoprotein 2
NR	XP_007158282.1	0	hypothetical protein PHAVU_002G139400g [Phaseolus vulgaris]
COG	YP_629357.1	1.00E-16	ABC transporter permease [Myxococcus xanthus DK 1622]
Swissprot	tr\|Q8LPK2\|AB2B_ARATH	8.00E-177	ABC transporter B family member 2 (Precursor)
trEMBL	tr\|V7CMZ7\|V7CMZ7_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW30276.1}

Sequence

Transcript Sequence

>Glyur001237s00036949.1
ATGTCAGAACGAGGTTCATTCTCCGGGGACATGGCTGTGGAGGCAAATGAGAATAAGAAAAAGGAGGAAGTAGAGGGTAGAAGGGGAAAGCCAAAGGTTCCTTTGATCAAGCTCTTCTCGTTTGCCGACTTNTATGATTGTGTCTTGATGGGTGTTGGATCTGTTGGGGCATGTGTTCATGGTGCCTCTGTTCCTGTTTTCTTTATCTTCTTTGGAAAGATTATCAATGTCATAGGCTTGGCTTACCTTTTCCCCAAAGAAGCTTCTCACCAAGTTGCCAAGTATTCGTTGGATTTTGTGTATCTAAGTTTAGTGATACTGTTTTCATCTTGGGCAGAGGTGGCTTGTTGGATGCATACTGGGGAACGTCAAGCAGCAAAGATGAGAATGGCATATTTAAAGGCAATGTTGAACCAAGATATAAGCCTTTTTGATACCGAGGCATCAACTGGAGATGTCATTTCTTCTATTACAAGTGACATCATCGTTGTTCAAGATGCATTATCTGAGAAGGTAGGAAACTTTATGCACTACATTAGCCGATTTATAACGGGCTTTATCATTGGTTTCGTGAGAGTGTGGCAGATCAGTTTAGTGACACTTGCAATTGTACCTTTGATTGCTCTTGCTGGAGGTCTTTATGCATACGTGACAATTGGGCTTATTGCAAATGTTCGGAAATCATATGTGAGGGCTGGTGAAATCGCTGAAGAGGTGATAGGCAATGTCAGAACCGTACAAACATTTGGAGGAGAGGAAAGGGCAGTGAGGTCATACAAAGCGGCTCTAATGAACACATATAGAAATGGTCGAAAAGCAGGTTTAGCAAAGGGCCTTGGACTGGGCTCTATGCACTGTGTCCTGTTTCTGTCATGGGCCCTGCTTGTTTGGTTCAACAGCATTGTTGTTCACAAGAACATTGCCAATGGTGGAGAGGCTTTCACCACCATGCTCAATGTGGTGATCTCTGGCCTGTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01237	42975	49720	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05658	ABCB1, CD243	EC:3.6.3.44	ABC transporters	map02010
			Bile secretion	map04976
			MicroRNAs in cancer	map05206

Gene Ontology

biological_process

GO:0006810 transport

GO:0055085 transmembrane transport

cellular_component GO:0016021 integral component of membrane molecular_function GO:0005524 ATP binding GO:0042626 ATPase activity, coupled to transmembrane movement of substances "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001237s00036949.1	PF00664.18	ABC_membrane	57	318	1.40E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.461
SRR1783600	control	1.319
SRR1783602	moderate drought stress	1.186
SRR1811619	moderate drought stress	1.178

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.110
DRR006520	Root Summer glycyrrhizin high producing strain	0.109
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.428
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.470

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.000
SRR2868004	Drought Stress(Tissue:root)	0.000
SRR2967015	Control (Tissue:root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	5.912
SRR9715740	Leave	3.093
SRR9715741	Leave	2.151
SRR9715739	Root	0.570
SRR9715742	Root	2.932
SRR9715743	Root	2.155

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.949
SRR8400027	Control-Root	0.299