Gene detail information of Glyur001238s00031493.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G40690.19.00E-178NAD-dependent glycerol-3-phosphate dehydrogenase family protein
NRXP_007141316.10hypothetical protein PHAVU_008G185600g [Phaseolus vulgaris]
COGYP_004626393.16.00E-77NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein [Thermodesulfatator indicus DSM 15286]
Swissprottr|Q949Q0|GPDA2_ARATH0Glycerol-3-phosphate dehydrogenase [NAD(+)] 2, chloroplastic (Precursor)
trEMBLtr|V7B6W0|V7B6W0_PHAVU0Glycerol-3-phosphate dehydrogenase [NAD(+)] {ECO:0000256|RuleBase:RU361243}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold01238569610152+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00006GPD1 EC:1.1.1.8 Glycerophospholipid metabolism map00564
MAPK signaling pathway - yeastmap04011


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006072  glycerol-3-phosphate metabolic process

GO:0046168  glycerol-3-phosphate catabolic process

GO:0055114  oxidation-reduction process


cellular_component

GO:0009331  glycerol-3-phosphate dehydrogenase complex


molecular_function

GO:0004367  glycerol-3-phosphate dehydrogenase [NAD+] activity

GO:0016491  oxidoreductase activity

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0051287  NAD binding

"

Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001238s00031493.1PF01210.18NAD_Gly3P_dh_N1082613.80E-34
Glyur001238s00031493.1PF07479.9NAD_Gly3P_dh_C2804237.50E-45


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.582
SRR1783600control2.529
SRR1783602moderate drought stress2.022
SRR1811619moderate drought stress1.982

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.150
DRR006520Root Summer glycyrrhizin high producing strain2.272
DRR006521Root Winter glycyrrhizin high producing strain2.751
DRR006522Root Winter glycyrrhizin high producing strain2.626
DRR006523Root Summer glycyrrhizin low producing strain1.836
DRR006524Root Summer glycyrrhizin low producing strain1.872
DRR006525Leaf Summer glycyrrhizin high producing strain5.350
DRR006526Leaf Summer glycyrrhizin high producing strain5.094

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)3.494
SRR2868004Drought Stress(Tissue:root)2.687
SRR2967015Control (Tissue:root)3.133

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.006
SRR9715740Leave4.471
SRR9715741Leave4.605
SRR9715739Root0.212
SRR9715742Root1.631
SRR9715743Root1.782

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.335
SRR8749028MeJA induced 9h2.011
SRR8749029MeJA induced 9h1.838
SRR8749030Uninduced1.877
SRR8749031Uninduced0.684
SRR8749032Uninduced0.688

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root4.810
SRR8400027Control-Root4.675

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved