Gene detail

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Gene detail information of Glyur001238s00031501.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G40740.1	6.00E-35	WRKY DNA-binding protein 55
NR	XP_003615413.1	2.19E-130	WRKY transcription factor-30 [Medicago truncatula]
Swissprot	tr\|Q9SHB5\|WRK55_ARATH	9.00E-53	WRKY transcription factor 55
trEMBL	tr\|G7K641\|G7K641_MEDTR	8.00E-131	WRKY family transcription factor {ECO:0000313\|EMBL:AES98371.1}

Sequence

Transcript Sequence

>Glyur001238s00031501.1
ATGGAAGAGGTGATGAATTCTATTAAGCGTGCTTGTGAATTGGCAAGAAACCTTGAAGCAGAACTACCCAACATGGTTAACCACCCTGATGTGCTATTCATTTCAATTGATGGTGTAGTGAAGGCATTTGGTGATGCTAAACAAAAGGTAATGATGGTGTTGTCACAACAAGACATGACAACAACAACAACAACAACATTAACAACACCTTCTTCCTTTGCTCCAATGTTGTTGCCTCATCATGATGATGATGCTTCCATTNAGCAGGACACTACTACACAGCAGACTCAGACGGGTGCTACCAGTACAACTCAAATGCAGGATTTGATGAATCAGTTGCTTCTAATGCAGCAACCTTTNGATGTGAGGACTTTGCTTGAAAACAAGATGATAAGTACTGGTGGGGATCTTAATCAGATGTTAAGGTCTACTAGGGGAACCTTGAGGATTGGTGAAATNGTTGGGAGGGATATTGTGGAAGGTAATTCTGAGAGATCAAAAGGCAGGAAGAATGATCTGGAGAAGAGAACAGTGATGTTTCCTGCACCTCAGGTTGGAAACACAGAGATGCCACCAGAGGATGGCTTCACTTGGAGAAAATATGGCCAGAAAGAGATACTTGGCCGCAAGCACCCNAAGAGTTACTATAGGTGCACACACCAGAAATTATATGCATGCCCAGCAAAGAAACAAGTACAAAGACTTGATGACAATCCATACATATTTGAGGTAACATACAGAGGTGAACATACATGTCACATGTCATCAACAGCACCATCATCATATCCACCACCACAAGTACTACTAGGGGANATGAGTACTCAAACCACCAATATTTCCCCACAATTGTCTCCATCATCGACCTCGGTTTCCGGGTGGCTGTCGTCGGTAAACCTTTGTCTCGGCGCCGGCGGTGGTGGAGCCGGCGCCGAGCCGTCTACTTCGAGATATGGGCCTGATAATTATCCGGTAGCTGATATGGCTGATGTTATGTTCAATTCGGGTAGTAGCAGTGGTAATAGCATGGAATCTCTCTTTGCTCCAACTGAAGATAAATGGGAACCAGGTGAGAAGAAAAGCTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01238	28955	31921	+

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001238s00031501.1	PF03106.10	WRKY	193	253	4.30E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.300
SRR1783600	control	0.337
SRR1783602	moderate drought stress	0.211
SRR1811619	moderate drought stress	0.193

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.585
DRR006520	Root Summer glycyrrhizin high producing strain	0.694
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.667
DRR006524	Root Summer glycyrrhizin low producing strain	0.787
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.088
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.085

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.158
SRR2868004	Drought Stress(Tissue:root)	0.498
SRR2967015	Control (Tissue:root)	0.134

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	2.568
SRR9715740	Leave	2.870
SRR9715741	Leave	4.696
SRR9715739	Root	0.091
SRR9715742	Root	1.539
SRR9715743	Root	0.984

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.148
SRR8749030	Uninduced	0.443
SRR8749031	Uninduced	0.141
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.180
SRR8400027	Control-Root	0.380