Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur001242s00026119.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G69830.1	0	alpha-amylase-like 3
NR	XP_004489999.1	0	PREDICTED: alpha-amylase 3, chloroplastic-like isoform X1 [Cicer arietinum]
COG	YP_003951996.1	1.00E-72	alpha-amylase [Stigmatella aurantiaca DW4/3-1]
Swissprot	tr\|Q94A41\|AMY3_ARATH	0	Alpha-amylase 3, chloroplastic (Precursor)
trEMBL	tr\|I1JBP4\|I1JBP4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G02450.1}

Sequence

Transcript Sequence

>Glyur001242s00026119.1
CCCGTGGATAAATTTTACATGTAGCAATTGAATCCGGGTCCGATTGCCATCCCGAGTTGGAGGCTTGGAGCTCAGCAAAGCCATGTTTGTGCAACCTCTTTCTCCTTTCTTCTTCTCTCCATTTGCTTNCAAAGCTACAAAACAACGATCATGTCGACCGTTGCCTTAGCACCTCTCTTCCACCTTCGCCGCAGAGAAAGTCCAATTCACCGTTCAAAGCCAAAACCATTGAGACCCTTCTTTTTCATTTGCTCTTCCAACCTCAACCTCAATAATCTCAATCTCAATCTCAATGCCTCCTTCAACTTCCACCAACCCCACGTGCCTCTCTCCCATCATGCACTTGCAGCTTCCGTTACAGACACACCTATCCCCCAATCCCTTCATTGCTCTGACACCTTCTTCGCCAACACTTTCCCAATCAACAGAATCCAAGTGGTGGAGGGAAAGGTTTTTGTGAGATTAGATCAAGGGAAGGATTTGAGGAATTGGGAGGTTACAGTGGGTTGTAATTTACCAGGAAAATGGATTCTTCACTGGGGTGTTACCCATGTTGATGATAATGGAAGTGCAAAATTTCAGGACTATGCAATAGAGACACCTTTGAAGAAGTCATCTTTACCTGCTGAAGGAGATACAACATTTCAAGAAATCAGGATTGATCTCAAACCCAACAGTGACATTTCAGCAATTAATTTTGTTCTCAAGGATGAGGAAACTGGAGCTTGGTATCAAAACAAAAGAAAAGATTTCAAAATTCCTTTGGTCAACTACCTTAAGGCAGATACTAATAAAAGGACCTTTAGTTTATGGCCAGGGAGTTTGGAGCAGATATCTAAAATGCTCCTCAAGTCAAGAGAAGGTCAAGATGACAGCAGTGAATCAAGAGATCCAAAACAAGAAAACAATCAACTAGAAGGTTTCTATGTAGAAATGCCTATTACAAAGGAGGTTCCAATCAACAACTCTATCAGTGTCTCCATTAAGAAATGCTTTGAGTTGGAGATGGTTAAGAACCTCTTATATTTTGAAACGGATCTATCTGGAGATATTGTCCTTCACTGGGGAGTTTGCAGGGATGACTCAAGAAGGTGGGAAGTTCCACCTTCTCCTCATCCGCCAGAAACTGTAGCATTTAAAGACAAAGCTTTGAGAACTCGATTACAGCCAAAAGGCGATGGAAAAGGATCTTCAGTACAAATCACTTTAGAAGAAGAATTTTCAGGATTTATTTTTGTTCTTAGGCAAAATGAAAATACTTGGTTCAAGTACAAGGGGAATGACTTTTATATCCCCCTCTCAAGTTCTAGCAGCNGGGAGGATCAGTCAGAAGGTGTGCAGGGGGAAGTGACTGAAGAGGCAAATCAAGGGACTTCTTTCTCTGCATTTACTGATGGCATTCTTCAAGAAATTGAAAGACTGGCTGCTGAAGCCTATAATTTCTTCAGAAGCTCCATTTCAACTTTCTCAGAGGCAACTATTGTGGAACCTGAGGTAACTATTGTGGAACCTGAACCTACTGTGGAACCAGAGACACCGACTCCATATCCAGAAATATGCCCAGGGACAGGCACAGGATATGAAATATTGTGCCAAGGGTTTAACTGGGAATCTCATAAATCTGGAAGATGGTACATGGAGCTTAAAGAGATAGCTTNGGAGCTAGCATCACTTGGCTTCACTGTGGTTTGGTTACCACCACCTACAGAGTCTGTTTCACCTGAAGGTTACATGCCAAAGGATTTGTATAATTTAAATTCCAGATATGGAAACATTGATGAGCTGAAAGAATTGGTGAAAAGATTTCATGAAGTTGGGATCAAAGTTCTAGGAGATGCTGTTTTAAATCACCGCTGTGCTCACTATCAGAATCAGAATGGTATATGGAACTTATTTGGCGGCCGTCTCAGCTGGGATGACCGTGCAGTTGTTGCTGATGATCCACATTTTCAGGGTAGGGGCAACAAGAGTAGTGGAGATATTTTTCATGCGGCTCCAAACATTGATCATTCACAAGACTTTGTGAGAAAGGATATCAAAGAATGGTTATGCTGGTTGAGGAAAGAAGTTGGGTATGATGGATGGAGGCTTGACTTTGTCAGAGGGTTTTGGGGTGGTTATGTAAGGGATTACGTGGATGCAAGTGAACCTTACTTTGCCGTGGGAGAGTACTGGGATTCCCTCAGGTATACATGTGGTGAAATGGATTATAATCAAGATGCTCATAGGCAAAGGATAATTGACTGGATCAGTGCCACCAATGGTATGGCTGCTGCATTTGATGTTACAACTAAAGGGATTCTCCATTCTGCATTGGAAAGATGTGAATATTGGCGGTTGTCAGATCAAAAGGGAAAACCCCCTGGCGTTGTTGGGTGGTGGCCATCTCGTGCTGTTACCTTTATAGAGAATCATGACACTGGTTCCACCCAGGTTCAAATCAGCAAGGCAGAAAGGGATGTTTATGCAGCCATCATTGATGAGCAAATCGCTATGAAGATCGGACCTGGACATTTTGAACCGCCTGGTGGCTCCCACAAATGGTCCCTAGCTGTTGAGGGAAGAGGCTACAAGATTTGGGAAGCATCATCAGAATATAATAATCATTAAACTCGTTAGTGTTTTGATATGTATATTATTATAGTCCCTTGTAAATCCTCTCCTATGTATATCTCATTGCCTTGCTCAAGAAGCAAGTTCTTATACTCTACAATAGGTCTTTTTTATTGGGATTGTGTAATGGCAGGCTCCAATTGAAGTGAGTTGTGCCACACAGTTGCTTAAGGAGGCATATATATGACCATAGAAGCAACGCTAAGAGTACATAGCATTTCAGCCAAATGCAGGGTCATCTGGAACTTGAAATATGTAGATGCCTTAAAGTCAGGAAATGAGTTCTATCATACACACTATATTTACAAAGCATATGATTCTAAGATATTGAGATGATACAATGTATACAAAT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01242	58443	66589	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CBM45,CBM45,GH13

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function GO:0003824 catalytic activity GO:0004556 alpha-amylase activity GO:0005509 calcium ion binding GO:0043169 cation binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001242s00026119.1	PF00128.19	Alpha-amylase	505	769	5.60E-24
Glyur001242s00026119.1	PF07821.7	Alpha-amyl_C2	760	811	1.90E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.524
SRR1783600	control	9.537
SRR1783602	moderate drought stress	11.529
SRR1811619	moderate drought stress	11.181

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.663
DRR006520	Root Summer glycyrrhizin high producing strain	9.419
DRR006521	Root Winter glycyrrhizin high producing strain	13.289
DRR006522	Root Winter glycyrrhizin high producing strain	13.383
DRR006523	Root Summer glycyrrhizin low producing strain	12.409
DRR006524	Root Summer glycyrrhizin low producing strain	12.545
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.320
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.307

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	13.422
SRR2868004	Drought Stress(Tissue:root)	12.626
SRR2967015	Control (Tissue:root)	11.382

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	5.447
SRR9715740	Leave	7.442
SRR9715741	Leave	10.050
SRR9715739	Root	1.939
SRR9715742	Root	8.188
SRR9715743	Root	6.959

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.245
SRR8749028	MeJA induced 9h	5.186
SRR8749029	MeJA induced 9h	2.364
SRR8749030	Uninduced	5.445
SRR8749031	Uninduced	3.158
SRR8749032	Uninduced	2.896

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	20.285
SRR8400027	Control-Root	18.687