Gene detail information of Glyur001242s00026119.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G69830.10alpha-amylase-like 3
NRXP_004489999.10PREDICTED: alpha-amylase 3, chloroplastic-like isoform X1 [Cicer arietinum]
COGYP_003951996.11.00E-72alpha-amylase [Stigmatella aurantiaca DW4/3-1]
Swissprottr|Q94A41|AMY3_ARATH0Alpha-amylase 3, chloroplastic (Precursor)
trEMBLtr|I1JBP4|I1JBP4_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G02450.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold012425844366589+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCBM45,CBM45,GH13


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004556  alpha-amylase activity

GO:0005509  calcium ion binding

GO:0043169  cation binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001242s00026119.2PF00128.19Alpha-amylase4957595.50E-24
Glyur001242s00026119.2PF07821.7Alpha-amyl_C27508011.90E-17


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.524
SRR1783600control9.537
SRR1783602moderate drought stress11.529
SRR1811619moderate drought stress11.181

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.663
DRR006520Root Summer glycyrrhizin high producing strain9.419
DRR006521Root Winter glycyrrhizin high producing strain13.289
DRR006522Root Winter glycyrrhizin high producing strain13.383
DRR006523Root Summer glycyrrhizin low producing strain12.409
DRR006524Root Summer glycyrrhizin low producing strain12.545
DRR006525Leaf Summer glycyrrhizin high producing strain3.320
DRR006526Leaf Summer glycyrrhizin high producing strain3.307

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.422
SRR2868004Drought Stress(Tissue:root)12.626
SRR2967015Control (Tissue:root)11.382

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.447
SRR9715740Leave7.442
SRR9715741Leave10.050
SRR9715739Root1.939
SRR9715742Root8.188
SRR9715743Root6.959

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h4.245
SRR8749028MeJA induced 9h5.186
SRR8749029MeJA induced 9h2.364
SRR8749030Uninduced5.445
SRR8749031Uninduced3.158
SRR8749032Uninduced2.896

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root20.285
SRR8400027Control-Root18.687

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved