Gene detail information of Glyur001253s00030148.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G47340.3 | 6.00E-50 | glutamine-dependent asparagine synthase 1 |
| NR | ABU95104.1 | 9.24E-60 | asparagine synthetase [Phaseolus vulgaris] |
| COG | YP_006284075.1 | 7.00E-46 | Asparagine synthetase B [Pectobacterium sp. SCC3193] |
| Swissprot | tr|P49092|ASNS1_LOTJA | 1.00E-59 | Asparagine synthetase [glutamine-hydrolyzing] 1 |
| trEMBL | tr|A9XS73|A9XS73_PHAVU | 3.00E-60 | Asparagine synthetase {ECO:0000256|PIRNR:PIRNR001589} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01253 | 64500 | 66903 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01953 | asnB, ASNS | EC:6.3.5.4 | Alanine, aspartate and glutamate metabolism | map00250 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001253s00030148.1 | PF01031.15 | Dynamin_M | 128 | 193 | 1.00E-09 |
| Glyur001253s00030148.1 | PF00733.16 | Asn_synthase | 364 | 493 | 3.60E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.722 |
| SRR1783600 | control | 6.786 |
| SRR1783602 | moderate drought stress | 1.593 |
| SRR1811619 | moderate drought stress | 1.772 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.962 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.104 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.232 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.332 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.034 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.746 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.140 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.401 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.872 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.488 |
| SRR2967015 | Control (Tissue:root) | 0.740 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.547 |
| SRR9715740 | Leave | 1.782 |
| SRR9715741 | Leave | 0.586 |
| SRR9715739 | Root | 0.796 |
| SRR9715742 | Root | 0.736 |
| SRR9715743 | Root | 0.856 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.325 |
| SRR8400027 | Control-Root | 2.774 |