Gene detail information of Glyur001254s00028556.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G73720.10transducin family protein / WD-40 repeat family protein
NRKHN48110.10WD40 repeat-containing protein SMU1 [Glycine soja]
COGYP_007122013.12.00E-36WD40 repeat-containing protein [Microcoleus sp. PCC 7113]
Swissprottr|Q8W117|SMU1_ARATH0Suppressor of mec-8 and unc-52 protein homolog 1
trEMBLtr|V7CN69|V7CN69_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW31599.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold012542181830373+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001254s00028556.1PF00400.27WD402182421.20E-05
Glyur001254s00028556.1PF00400.27WD402602913.50E-09
Glyur001254s00028556.1PF00400.27WD402963334.60E-06
Glyur001254s00028556.1PF00400.27WD403403775.30E-10
Glyur001254s00028556.1PF00400.27WD404785120.0011


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control17.219
SRR1783600control17.314
SRR1783602moderate drought stress20.458
SRR1811619moderate drought stress20.399

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain33.893
DRR006520Root Summer glycyrrhizin high producing strain33.211
DRR006521Root Winter glycyrrhizin high producing strain26.520
DRR006522Root Winter glycyrrhizin high producing strain25.900
DRR006523Root Summer glycyrrhizin low producing strain25.574
DRR006524Root Summer glycyrrhizin low producing strain25.657
DRR006525Leaf Summer glycyrrhizin high producing strain14.175
DRR006526Leaf Summer glycyrrhizin high producing strain14.065

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)47.420
SRR2868004Drought Stress(Tissue:root)42.368
SRR2967015Control (Tissue:root)43.472

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave23.708
SRR9715740Leave30.663
SRR9715741Leave32.508
SRR9715739Root13.593
SRR9715742Root24.928
SRR9715743Root21.572

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h74.682
SRR8749028MeJA induced 9h34.128
SRR8749029MeJA induced 9h57.636
SRR8749030Uninduced16.604
SRR8749031Uninduced12.942
SRR8749032Uninduced17.702

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root48.204
SRR8400027Control-Root42.526

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved