Gene detail

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Gene detail information of Glyur001254s00028557.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G30933.1	2.00E-33	Carbohydrate-binding X8 domain superfamily protein
NR	XP_006595754.1	8.14E-134	PREDICTED: glucan endo-1,3-beta-glucosidase 12-like [Glycine max]
Swissprot	tr\|O65399\|E131_ARATH	5.00E-25	Glucan endo-1,3-beta-glucosidase 1 (Precursor)
trEMBL	tr\|K7M4M3\|K7M4M3_SOYBN	3.00E-134	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G03221.1}

Sequence

Transcript Sequence

>Glyur001254s00028557.1
CTTGATGTATGAACATAACCAATGTAAGGAGAAAAATGAAAAAGAAAAAGAAAAAGAAGATAAGAAGAAGAAGTTTCTATACAAGAGTAAAAATGAAAAGAATAGAAAAGAGAAAAAGCAAAATGTATACATCAGCACCATCATTACAATCATCACTTACTAGCCCACAATCCGGACCTATATTCCAAACAATTCTGCCTTTACTTTGTTTTCAACCTTCTTCTCCACCTTTTCCCTCCTTTTTGCTCCTTCATCACCCTCCAACACTCTTCTATACCCCATTTTGTTTCTCAAAAAATCATCTCATTTGTCTATCACGACCACACACACAGTCTACCACTACCAATATATATACTTTTAGTTTTGTTGAATGATTATCCCACAAAACACCTTCTCTTTTTTTTCTCTCTAGATCATTCACCATCTCTAGTTTATCATATCTTCCTTTCTCTTTCATTGATTCAAAAGGAAGAACTACTATAACTGGGGAACCACATTGAACAAAAAAGTGAGAGGAGGAAGCAGAAAGTGTCACAGAAGCAGTAGCACAATAGGATTAAAGATGGAAAGGAGTATATATTACTACGTAATATTTCTCCTACTGGTTCAAGTCCTATGTTCAGGTTCAAGTAGGACAAAAAAGGTGGTAGCACCAAGACATGTCAATGTACTAAGACGTGAAAGGAAACAAAAATTCACTGCCCCAATTTCCACTGTCCAAAAAGATATTACCACTCCCATCACTACCATTCCTAACATAGTTCCCACCATTTCAACACCTCCATTTCTGAATCCTAATTCCAACCCAGATACAGCAGTTTCTCCGGCCTCCACACATCCAATTACCGCTCCTCCAACCACAGTGAACTCTCCAGTGTCTTCTTCAGGTGCAAGCTGGTGCATTGCAAGCCCAACTTCCTCACAGATTTCTTTACAAGTTGCATTGGACTATGCTTGTGGCTATGGAAGTGCTGATTGTTCAGCAATTCAACCTGGTGGAAGCTGTTACAACCCAAATTCTATCCGTGACCATGCTTCTTATGCCTTCAATAAGTATTATCAAAAGAATCCTGTTCCAAATAGCTGCAATTTTGGTGGAGCTGCTGTCATCACTAGCACTAACCCAAGCACTGGAACATGTCAATATCCATCCACAAGTACAAGTTCATCAATCTTGAACACGACAAACTCAAGTGGTGCCAACGTTTTTGGTTCAGTGCCAGAACCCACCAATCCTTCTCCCTCTTCTGTGGCCCCTGTCACATTAAATAACTACGCAGATATTTGTGTTATTCTTTGGGCAATATCTATTTTGGAAAAGAATTTTTCCAAAATTATCAATTATTTTTGAAAAAAAAAATGGATGAGACATGAGAGATAAATCTTGCTGCTTTTACCCAATAAAAAAATTTTGCCTCTTTTACGGGTCTTTTGGGAGAATGAAGAGCATATAGCTGCAAGACCATAACATACATGGTAGAAAGAAACACTTTGT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01254	31840	35551	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CBM43

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001254s00028557.1	PF07983.8	X8	112	181	1.20E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.975
SRR1783600	control	15.203
SRR1783602	moderate drought stress	15.368
SRR1811619	moderate drought stress	15.597

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.319
DRR006520	Root Summer glycyrrhizin high producing strain	6.193
DRR006521	Root Winter glycyrrhizin high producing strain	0.148
DRR006522	Root Winter glycyrrhizin high producing strain	0.129
DRR006523	Root Summer glycyrrhizin low producing strain	4.498
DRR006524	Root Summer glycyrrhizin low producing strain	4.552
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.618
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.192

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	3.081
SRR2868004	Drought Stress(Tissue:root)	1.799
SRR2967015	Control (Tissue:root)	2.748

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.617
SRR9715740	Leave	2.932
SRR9715741	Leave	1.153
SRR9715739	Root	0.700
SRR9715742	Root	0.967
SRR9715743	Root	1.339

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.821
SRR8749028	MeJA induced 9h	0.200
SRR8749029	MeJA induced 9h	0.242
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.008

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	9.964
SRR8400027	Control-Root	8.886