Gene detail information of Glyur001254s00028560.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G41880.10DNA primases;DNA primases
NRXP_004500398.10PREDICTED: DNA primase small subunit-like isoform X1 [Cicer arietinum]
COGYP_004004165.13.00E-10DNA primase, small subunit [Methanothermus fervidus DSM 2088]
trEMBLtr|I1JJ44|I1JJ44_SOYBN0DNA primase {ECO:0000256|RuleBase:RU003514}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold012546585969683+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02684PRI1 EC:2.7.7.- Purine metabolism map00230
Pyrimidine metabolismmap00240
DNA replicationmap03030


Gene Ontology

biological_process

GO:0006269  DNA replication, synthesis of RNA primer


molecular_function

GO:0003896  DNA primase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001254s00028560.1PF01896.14DNA_primase_S1183541.20E-53


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.595
SRR1783600control8.689
SRR1783602moderate drought stress2.232
SRR1811619moderate drought stress2.084

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.745
DRR006520Root Summer glycyrrhizin high producing strain4.504
DRR006521Root Winter glycyrrhizin high producing strain2.241
DRR006522Root Winter glycyrrhizin high producing strain2.457
DRR006523Root Summer glycyrrhizin low producing strain4.346
DRR006524Root Summer glycyrrhizin low producing strain4.303
DRR006525Leaf Summer glycyrrhizin high producing strain0.536
DRR006526Leaf Summer glycyrrhizin high producing strain0.540

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.653
SRR2868004Drought Stress(Tissue:root)6.063
SRR2967015Control (Tissue:root)5.972

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.076
SRR9715740Leave0.076
SRR9715741Leave0.801
SRR9715739Root1.203
SRR9715742Root2.131
SRR9715743Root1.884

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h29.431
SRR8749028MeJA induced 9h7.778
SRR8749029MeJA induced 9h6.588
SRR8749030Uninduced0.396
SRR8749031Uninduced0.496
SRR8749032Uninduced0.165

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.154
SRR8400027Control-Root12.480

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved