Gene detail information of Glyur001259s00024419.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G50530.10CDPK-related kinase
NRXP_004511959.10PREDICTED: CDPK-related kinase 5-like [Cicer arietinum]
COGYP_003134347.15.00E-16protein kinase family protein [Saccharomonospora viridis DSM 43017]
Swissprottr|Q9SCS2|CAMK5_ARATH0CDPK-related kinase 5
trEMBLtr|G7K819|G7K819_MEDTR0Calmodulin-domain kinase CDPK protein {ECO:0000313|EMBL:AES94744.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold012595465358708-


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:4.2.1


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005509  calcium ion binding

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001259s00024419.1PF00069.20Pkinase1372873.00E-34
Glyur001259s00024419.1PF00069.20Pkinase2943484.80E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.294
SRR1783600control1.241
SRR1783602moderate drought stress1.740
SRR1811619moderate drought stress1.596

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.707
DRR006520Root Summer glycyrrhizin high producing strain2.685
DRR006521Root Winter glycyrrhizin high producing strain0.382
DRR006522Root Winter glycyrrhizin high producing strain0.270
DRR006523Root Summer glycyrrhizin low producing strain0.957
DRR006524Root Summer glycyrrhizin low producing strain0.842
DRR006525Leaf Summer glycyrrhizin high producing strain1.844
DRR006526Leaf Summer glycyrrhizin high producing strain1.968

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)7.754
SRR2868004Drought Stress(Tissue:root)6.992
SRR2967015Control (Tissue:root)6.209

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.427
SRR9715740Leave1.190
SRR9715741Leave1.294
SRR9715739Root0.636
SRR9715742Root2.379
SRR9715743Root2.425

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.398
SRR8749028MeJA induced 9h1.308
SRR8749029MeJA induced 9h0.610
SRR8749030Uninduced0.684
SRR8749031Uninduced0.172
SRR8749032Uninduced0.169

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root5.501
SRR8400027Control-Root5.990

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved