Gene detail information of Glyur001263s00024654.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G47790.1 | 3.00E-145 | Transducin/WD40 repeat-like superfamily protein |
| NR | XP_007163101.1 | 0 | hypothetical protein PHAVU_001G206300g [Phaseolus vulgaris] |
| COG | YP_001275252.1 | 1.00E-10 | WD-40 repeat-containing protein [Roseiflexus sp. RS-1] |
| trEMBL | tr|V7D0Q5|V7D0Q5_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW35095.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01263 | 8970 | 12698 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001263s00024654.1 | PF00400.27 | WD40 | 73 | 108 | 1.70E-08 |
| Glyur001263s00024654.1 | PF00400.27 | WD40 | 164 | 195 | 0.00052 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.433 |
| SRR1783600 | control | 9.724 |
| SRR1783602 | moderate drought stress | 10.536 |
| SRR1811619 | moderate drought stress | 10.429 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.512 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.487 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.226 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.909 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.422 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.683 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.707 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.785 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 21.767 |
| SRR2868004 | Drought Stress(Tissue:root) | 22.196 |
| SRR2967015 | Control (Tissue:root) | 19.375 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.792 |
| SRR9715740 | Leave | 14.559 |
| SRR9715741 | Leave | 11.017 |
| SRR9715739 | Root | 10.398 |
| SRR9715742 | Root | 12.287 |
| SRR9715743 | Root | 10.988 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.279 |
| SRR8749028 | MeJA induced 9h | 9.984 |
| SRR8749029 | MeJA induced 9h | 5.486 |
| SRR8749030 | Uninduced | 4.921 |
| SRR8749031 | Uninduced | 2.260 |
| SRR8749032 | Uninduced | 1.362 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 21.061 |
| SRR8400027 | Control-Root | 20.326 |