Gene detail information of Glyur001263s00024657.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G02500.1 | 0 | UDP-xylosyltransferase 2 |
| NR | XP_003554517.1 | 0 | PREDICTED: putative glycosyltransferase 2-like [Glycine max] |
| Swissprot | tr|Q9LZJ3|XXT1_ARATH | 0 | Xyloglucan 6-xylosyltransferase 1 |
| trEMBL | tr|I1NB50|I1NB50_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G39760.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01263 | 24896 | 26293 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT34 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001263s00024657.1 | PF05637.7 | Glyco_transf_34 | 153 | 392 | 3.30E-73 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 23.486 |
| SRR1783600 | control | 23.590 |
| SRR1783602 | moderate drought stress | 19.380 |
| SRR1811619 | moderate drought stress | 19.834 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 31.103 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.019 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 28.092 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 28.114 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 77.967 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 77.275 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.859 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.879 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 13.442 |
| SRR2868004 | Drought Stress(Tissue:root) | 17.103 |
| SRR2967015 | Control (Tissue:root) | 20.763 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 43.247 |
| SRR9715740 | Leave | 35.624 |
| SRR9715741 | Leave | 40.970 |
| SRR9715739 | Root | 33.866 |
| SRR9715742 | Root | 59.614 |
| SRR9715743 | Root | 55.680 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 35.903 |
| SRR8749028 | MeJA induced 9h | 64.743 |
| SRR8749029 | MeJA induced 9h | 46.411 |
| SRR8749030 | Uninduced | 78.729 |
| SRR8749031 | Uninduced | 63.907 |
| SRR8749032 | Uninduced | 37.751 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 11.571 |
| SRR8400027 | Control-Root | 21.463 |