Gene detail information of Glyur001265s00034988.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G26030.2 | 3.00E-156 | ferrochelatase 1 |
| NR | KHN29732.1 | 0 | Ferrochelatase-2, chloroplastic [Glycine soja] |
| COG | YP_007167757.1 | 7.00E-138 | ferrochelatase [Halothece sp. PCC 7418] |
| Swissprot | tr|P42044|HEMH_CUCSA | 0 | Ferrochelatase-2, chloroplastic (Precursor) |
| trEMBL | tr|I1JTV8|I1JTV8_SOYBN | 0 | Ferrochelatase {ECO:0000256|RuleBase:RU000607} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01265 | 6800 | 19597 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01772 | hemH, FECH | EC:4.99.1.1 4.99.1.9 | Porphyrin and chlorophyll metabolism | map00860 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001265s00034988.1 | PF00762.14 | Ferrochelatase | 182 | 505 | 7.50E-109 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.711 |
| SRR1783600 | control | 6.984 |
| SRR1783602 | moderate drought stress | 10.572 |
| SRR1811619 | moderate drought stress | 9.886 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.846 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.739 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.447 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.419 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.480 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.445 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.815 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.071 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.103 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.343 |
| SRR2967015 | Control (Tissue:root) | 12.183 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.041 |
| SRR9715740 | Leave | 15.003 |
| SRR9715741 | Leave | 11.104 |
| SRR9715739 | Root | 2.725 |
| SRR9715742 | Root | 7.239 |
| SRR9715743 | Root | 5.795 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.510 |
| SRR8749028 | MeJA induced 9h | 15.114 |
| SRR8749029 | MeJA induced 9h | 8.684 |
| SRR8749030 | Uninduced | 11.787 |
| SRR8749031 | Uninduced | 5.339 |
| SRR8749032 | Uninduced | 6.172 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 17.585 |
| SRR8400027 | Control-Root | 15.982 |