Gene detail information of Glyur001267s00031635.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G58760.1 | 0 | damaged DNA binding 2 |
| NR | AES98591.2 | 0 | damaged DNA-binding protein [Medicago truncatula] |
| COG | YP_007037039.1 | 2.00E-07 | hypothetical protein BN6_28570 [Saccharothrix espanaensis DSM 44229] |
| Swissprot | tr|Q6NQ88|DDB2_ARATH | 0 | Protein DAMAGED DNA-BINDING 2 |
| trEMBL | tr|G7KE47|G7KE47_MEDTR | 0 | Damaged DNA-binding protein {ECO:0000313|EMBL:AES98591.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01267 | 36475 | 41903 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001267s00031635.1 | PF00400.27 | WD40 | 169 | 203 | 0.00094 |
| Glyur001267s00031635.1 | PF00400.27 | WD40 | 358 | 389 | 0.0009 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.731 |
| SRR1783600 | control | 3.761 |
| SRR1783602 | moderate drought stress | 2.988 |
| SRR1811619 | moderate drought stress | 3.028 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.636 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.667 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.869 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.945 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.777 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.875 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.022 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.028 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.886 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.683 |
| SRR2967015 | Control (Tissue:root) | 7.503 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 28.135 |
| SRR9715740 | Leave | 42.854 |
| SRR9715741 | Leave | 35.292 |
| SRR9715739 | Root | 0.813 |
| SRR9715742 | Root | 3.033 |
| SRR9715743 | Root | 2.739 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 29.265 |
| SRR8749028 | MeJA induced 9h | 18.611 |
| SRR8749029 | MeJA induced 9h | 16.147 |
| SRR8749030 | Uninduced | 9.271 |
| SRR8749031 | Uninduced | 7.182 |
| SRR8749032 | Uninduced | 6.712 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.275 |
| SRR8400027 | Control-Root | 5.257 |