Gene detail information of Glyur001268s00035617.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G18950.1 | 1.00E-44 | homogentisate phytyltransferase 1 |
| NR | AFK46130.1 | 1.41E-59 | unknown [Lotus japonicus] |
| COG | YP_007159525.1 | 1.00E-18 | homogentisate phytyltransferase [Anabaena cylindrica PCC 7122] |
| Swissprot | tr|Q8VWJ1|HPT1_ARATH | 5.00E-53 | Homogentisate phytyltransferase 1, chloroplastic (Precursor) |
| trEMBL | tr|I3T0T8|I3T0T8_LOTJA | 5.00E-60 | Uncharacterized protein {ECO:0000313|EMBL:AFK46130.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01268 | 50900 | 53930 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K09833 | HPT, HGGT, ubiA | EC:2.5.1.115 2.5.1.116 | Ubiquinone and other terpenoid-quinone biosynthesis | map00130 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001268s00035617.1 | PF01040.13 | UbiA | 7 | 140 | 1.90E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.217 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.463 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 44.043 |
| SRR9715740 | Leave | 5.380 |
| SRR9715741 | Leave | 11.226 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.172 |
| SRR9715743 | Root | 0.083 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.000 |
| SRR8400027 | Control-Root | 0.617 |