Gene detail information of Glyur001269s00036687.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G11880.10Pyridoxal-dependent decarboxylase family protein
NRXP_003542519.20PREDICTED: diaminopimelate decarboxylase 1, chloroplastic-like isoform X1 [Glycine max]
COGYP_002248957.12.00E-91diaminopimelate decarboxylase [Thermodesulfovibrio yellowstonii DSM 11347]
Swissprottr|Q94A94|DCDA2_ARATH0Diaminopimelate decarboxylase 2, chloroplastic (Precursor)
trEMBLtr|I1LZ51|I1LZ51_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G20390.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold01269612211905+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01586lysA EC:4.1.1.20 Biosynthesis of amino acids map01230
Lysine biosynthesismap00300


Gene Ontology

biological_process

GO:0009089  lysine biosynthetic process via diaminopimelate


molecular_function

GO:0003824  catalytic activity

GO:0008836  diaminopimelate decarboxylase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001269s00036687.1PF02784.11Orn_Arg_deC_N1083513.40E-49
Glyur001269s00036687.1PF00278.17Orn_DAP_Arg_deC3564631.70E-18


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control61.095
SRR1783600control61.634
SRR1783602moderate drought stress13.523
SRR1811619moderate drought stress13.707

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain28.937
DRR006520Root Summer glycyrrhizin high producing strain28.633
DRR006521Root Winter glycyrrhizin high producing strain3.642
DRR006522Root Winter glycyrrhizin high producing strain3.615
DRR006523Root Summer glycyrrhizin low producing strain8.476
DRR006524Root Summer glycyrrhizin low producing strain8.722
DRR006525Leaf Summer glycyrrhizin high producing strain1.489
DRR006526Leaf Summer glycyrrhizin high producing strain1.436

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)168.204
SRR2868004Drought Stress(Tissue:root)55.973
SRR2967015Control (Tissue:root)55.182

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.310
SRR9715740Leave1.091
SRR9715741Leave1.808
SRR9715739Root27.054
SRR9715742Root53.520
SRR9715743Root54.356

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.239
SRR8749028MeJA induced 9h0.904
SRR8749029MeJA induced 9h1.509
SRR8749030Uninduced0.504
SRR8749031Uninduced0.489
SRR8749032Uninduced1.210

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root66.112
SRR8400027Control-Root59.163

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved