Gene detail information of Glyur001271s00028145.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G32620.1 | 2.00E-44 | cellulose synthase-like B |
| NR | KEH39003.1 | 3.54E-105 | cellulose synthase H1-like protein [Medicago truncatula] |
| Swissprot | tr|Q8RX83|CSLB3_ARATH | 1.00E-60 | Cellulose synthase-like protein B3 |
| trEMBL | tr|A0A072VC45|A0A072VC45_MEDTR | 1.00E-105 | Cellulose synthase H1-like protein {ECO:0000313|EMBL:KEH39003.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01271 | 18692 | 22972 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001271s00028145.1 | PF03552.9 | Cellulose_synt | 94 | 180 | 4.20E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.022 |
| SRR1783600 | control | 2.866 |
| SRR1783602 | moderate drought stress | 1.342 |
| SRR1811619 | moderate drought stress | 1.458 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.116 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.065 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.115 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.238 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.285 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 13.541 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.433 |
| SRR2967015 | Control (Tissue:root) | 9.425 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.015 |
| SRR9715740 | Leave | 0.029 |
| SRR9715741 | Leave | 0.260 |
| SRR9715739 | Root | 0.730 |
| SRR9715742 | Root | 0.217 |
| SRR9715743 | Root | 0.291 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.349 |
| SRR8749028 | MeJA induced 9h | 0.352 |
| SRR8749029 | MeJA induced 9h | 0.396 |
| SRR8749030 | Uninduced | 0.108 |
| SRR8749031 | Uninduced | 0.498 |
| SRR8749032 | Uninduced | 0.120 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.576 |
| SRR8400027 | Control-Root | 3.603 |