Gene detail information of Glyur001271s00028146.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G15440.17.00E-112hydroperoxide lyase 1
NRBAJ78217.1013-hydroperoxide lyase [Lotus japonicus]
COGYP_002501570.17.00E-22heme peroxidase [Methylobacterium nodulans ORS 2060]
Swissprottr|Q9ZSY9|C74B2_ARATH0Linolenate hydroperoxide lyase, chloroplastic {ECO:0000305|PubMed:9701595} (Precursor)
trEMBLtr|E9RHS5|E9RHS5_LOTJA013-hydroperoxide lyase {ECO:0000313|EMBL:BAJ78217.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold012712354227041-


Gene family

Gene familysubfamily
Cytochrome P450 FamilyCYP74B2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10528HPL EC:4.1.2.- alpha-Linolenic acid metabolism map00592


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0004497  monooxygenase activity

GO:0005506  iron ion binding

GO:0016705  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037  heme binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001271s00028146.1PF00067.17p4503144607.00E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control36.652
SRR1783600control36.130
SRR1783602moderate drought stress32.129
SRR1811619moderate drought stress32.843

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain29.137
DRR006520Root Summer glycyrrhizin high producing strain25.566
DRR006521Root Winter glycyrrhizin high producing strain6.629
DRR006522Root Winter glycyrrhizin high producing strain5.203
DRR006523Root Summer glycyrrhizin low producing strain9.069
DRR006524Root Summer glycyrrhizin low producing strain8.636
DRR006525Leaf Summer glycyrrhizin high producing strain82.480
DRR006526Leaf Summer glycyrrhizin high producing strain80.014

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)6.387
SRR2868004Drought Stress(Tissue:root)4.006
SRR2967015Control (Tissue:root)5.895

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave153.224
SRR9715740Leave155.795
SRR9715741Leave155.457
SRR9715739Root65.013
SRR9715742Root61.431
SRR9715743Root64.391

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h4.168
SRR8749028MeJA induced 9h7.744
SRR8749029MeJA induced 9h5.792
SRR8749030Uninduced1.539
SRR8749031Uninduced0.404
SRR8749032Uninduced1.337

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root32.117
SRR8400027Control-Root26.686

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved