Gene detail information of Glyur001273s00033748.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G44950.10histone mono-ubiquitination 1
NRXP_004492186.10PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1-like isoform X2 [Cicer arietinum]
Swissprottr|Q8RXD6|BRE1A_ARATH0E3 ubiquitin-protein ligase BRE1-like 1
trEMBLtr|K7K2G2|K7K2G2_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G13654.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold012731192537091+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001273s00033748.1PF13920.1zf-C3HC4_37648061.00E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.792
SRR1783600control7.465
SRR1783602moderate drought stress11.771
SRR1811619moderate drought stress11.612

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.893
DRR006520Root Summer glycyrrhizin high producing strain14.749
DRR006521Root Winter glycyrrhizin high producing strain29.311
DRR006522Root Winter glycyrrhizin high producing strain27.458
DRR006523Root Summer glycyrrhizin low producing strain14.729
DRR006524Root Summer glycyrrhizin low producing strain14.449
DRR006525Leaf Summer glycyrrhizin high producing strain8.866
DRR006526Leaf Summer glycyrrhizin high producing strain8.341

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)22.339
SRR2868004Drought Stress(Tissue:root)27.893
SRR2967015Control (Tissue:root)29.277

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave16.400
SRR9715740Leave19.438
SRR9715741Leave21.719
SRR9715739Root1.363
SRR9715742Root7.030
SRR9715743Root7.045

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h21.027
SRR8749028MeJA induced 9h25.163
SRR8749029MeJA induced 9h18.274
SRR8749030Uninduced13.870
SRR8749031Uninduced24.070
SRR8749032Uninduced16.204

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root23.259
SRR8400027Control-Root22.915

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved