Gene detail information of Glyur001274s00032045.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G20070.13.00E-161nudix hydrolase homolog 19
NRKEH37952.10nudix family hydrolase [Medicago truncatula]
COGYP_002298437.15.00E-48peroxisomal NADH pyrophosphatase [Rhodospirillum centenum SW]
Swissprottr|Q94A82|NUD19_ARATH0Nudix hydrolase 19, chloroplastic (Precursor)
trEMBLtr|A0A072V814|A0A072V814_MEDTR0Nudix family hydrolase {ECO:0000313|EMBL:KEH37952.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold012742232126802-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03426E3.6.1.22, NUDT12, nudC EC:3.6.1.22 Nicotinate and nicotinamide metabolism map00760
Peroxisomemap04146


Gene Ontology

molecular_function

GO:0016787  hydrolase activity

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001274s00032045.1PF09296.6NUDIX-like1122305.10E-08
Glyur001274s00032045.1PF09297.6zf-NADH-PPase2352653.30E-07
Glyur001274s00032045.1PF00293.23NUDIX2753885.10E-18


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control22.147
SRR1783600control22.130
SRR1783602moderate drought stress19.111
SRR1811619moderate drought stress19.383

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain20.186
DRR006520Root Summer glycyrrhizin high producing strain20.064
DRR006521Root Winter glycyrrhizin high producing strain29.163
DRR006522Root Winter glycyrrhizin high producing strain27.890
DRR006523Root Summer glycyrrhizin low producing strain19.217
DRR006524Root Summer glycyrrhizin low producing strain18.736
DRR006525Leaf Summer glycyrrhizin high producing strain22.649
DRR006526Leaf Summer glycyrrhizin high producing strain22.265

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)41.345
SRR2868004Drought Stress(Tissue:root)39.815
SRR2967015Control (Tissue:root)36.413

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave31.004
SRR9715740Leave28.654
SRR9715741Leave29.408
SRR9715739Root18.618
SRR9715742Root23.982
SRR9715743Root25.206

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h20.200
SRR8749028MeJA induced 9h27.016
SRR8749029MeJA induced 9h16.689
SRR8749030Uninduced14.859
SRR8749031Uninduced7.841
SRR8749032Uninduced9.275

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root39.274
SRR8400027Control-Root42.550

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved