Gene detail information of Glyur001277s00024296.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G18480.13.00E-174P-loop containing nucleoside triphosphate hydrolases superfamily protein
NRKEH30930.10magnesium-chelatase subunit ChlI [Medicago truncatula]
COGYP_007110438.10protoporphyrin IX magnesium-chelatase [Geitlerinema sp. PCC 7407]
Swissprottr|P93162|CHLI_SOYBN0Magnesium-chelatase subunit ChlI, chloroplastic (Precursor)
trEMBLtr|A0A072UYL1|A0A072UYL1_MEDTR0Magnesium-chelatase subunit ChlI {ECO:0000313|EMBL:KEH30930.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold012771768119870+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03405chlI, bchI EC:6.6.1.1 Porphyrin and chlorophyll metabolism map00860


Gene Ontology

biological_process

GO:0006779  porphyrin-containing compound biosynthetic process

GO:0015979  photosynthesis

GO:0015995  chlorophyll biosynthetic process


molecular_function

GO:0005524  ATP binding

GO:0016851  magnesium chelatase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001277s00024296.1PF01078.16Mg_chelatase1932632.10E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.827
SRR1783600control8.016
SRR1783602moderate drought stress9.031
SRR1811619moderate drought stress8.965

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.203
DRR006520Root Summer glycyrrhizin high producing strain14.063
DRR006521Root Winter glycyrrhizin high producing strain13.039
DRR006522Root Winter glycyrrhizin high producing strain12.333
DRR006523Root Summer glycyrrhizin low producing strain12.463
DRR006524Root Summer glycyrrhizin low producing strain12.600
DRR006525Leaf Summer glycyrrhizin high producing strain133.369
DRR006526Leaf Summer glycyrrhizin high producing strain132.599

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.621
SRR2868004Drought Stress(Tissue:root)16.376
SRR2967015Control (Tissue:root)18.607

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave142.626
SRR9715740Leave188.577
SRR9715741Leave106.191
SRR9715739Root7.828
SRR9715742Root12.273
SRR9715743Root12.740

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h22.449
SRR8749028MeJA induced 9h16.293
SRR8749029MeJA induced 9h15.304
SRR8749030Uninduced11.920
SRR8749031Uninduced8.265
SRR8749032Uninduced12.745

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root19.731
SRR8400027Control-Root20.717

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved