Gene detail information of Glyur001277s00024308.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G06280.1 | 1.00E-13 | LOB domain-containing protein 2 |
| NR | XP_004505394.1 | 1.72E-35 | PREDICTED: LOB domain-containing protein 12-like [Cicer arietinum] |
| Swissprot | tr|P59468|LBD24_ARATH | 4.00E-16 | LOB domain-containing protein 24 |
| trEMBL | tr|A0A072UMQ1|A0A072UMQ1_MEDTR | 4.00E-24 | LOB domain protein {ECO:0000313|EMBL:KEH30942.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01277 | 77955 | 78762 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001277s00024308.1 | PF03195.9 | DUF260 | 24 | 104 | 2.30E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.089 |
| SRR1811619 | moderate drought stress | 0.003 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.074 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.073 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.076 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.075 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.428 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.234 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.018 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.102 |
| SRR2967015 | Control (Tissue:root) | 0.035 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.066 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.128 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.158 |
| SRR8749028 | MeJA induced 9h | 1.324 |
| SRR8749029 | MeJA induced 9h | 0.097 |
| SRR8749030 | Uninduced | 1.735 |
| SRR8749031 | Uninduced | 2.343 |
| SRR8749032 | Uninduced | 0.705 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.032 |
| SRR8400027 | Control-Root | 0.020 |