Gene detail

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Gene detail information of Glyur001278s00025612.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G73480.1	1.00E-130	alpha/beta-Hydrolases superfamily protein
NR	XP_007160564.1	0	hypothetical protein PHAVU_002G332300g [Phaseolus vulgaris]
COG	YP_006807171.1	2.00E-47	putative hydrolase (modular protein) [Nocardia brasiliensis ATCC 700358]
Swissprot	tr\|Q9C942\|CSE_ARATH	1.00E-38	Caffeoylshikimate esterase
trEMBL	tr\|V7CT65\|V7CT65_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW32558.1}

Sequence

Transcript Sequence

>Glyur001278s00025612.1
ATGATGTTGACGTCAGGGGCGAGTGGGCGCATCAACGCCCTCTTCTCCCTCCGAGCGCTGAGCACCATCTTTGCCTTCTTCCACGCCCTCCTTTTGCTCCTCCGCAAAGGGACTACGCCCCCCCTCCGACTCCCCACCTTCAACTTGAAGAATATCAATATCAATATCACGCTGCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATTTCCAGGAGGGCCTTGGCCATTCGGAGAGTGTTGGAGGACCGCGATTCGACCCTGACCCTCCGTAACTACTCCCTCTTCCCAACCCCAAGGGGTGACACCCTCTTCACCCAGTCTTGGGGAGTTGTTCTTCTCATGCACGGGCTTAATGAACACAGTGGCAGATATGGTCATTTTGCAAAGCAGCTCAATGCTCATGGCTTCAAGGTTTATGGGATGGATTGGGTTGGCCATGGTGGAAGTGATGGACTGCATGCATATGTCCCTTCTCTTGATGATGCCGTTTCTGATATGAAAGTATTTCTTGAGAAGGTTCTAACTGAAAATCCTGGGCTTCCATGTTTCTGCTTTGGACACTCAACGGGTGCAGCCATCACTCTTAAGGCACTGCTTGATCCGAAGGTTGAAGCTCGCATAGCTGGTGCTGTATTGACTTCACCAGCAGTTGGAGTTGCACCCTCTCATCCAATTTTGTTGGTACTTGCTCCCATAGTTTCATTTTTGCTGCCAACATATCAATTTAGTGCTGCATATAAGAAGGGATTGCCAGTGTCTCGCGATCCAGAGGCACTAATAGCTAAATATTCTGACCCCTTAGTATGTACTGGATCTCTTAGAGTACGAACTGGCCACGAGATTCTCAGAATTACAAGCTACTTGCAGCAAAATATGAGAAAATTGAGAGTTCCATTTTTTGTTCTCCATGGCACTGCTGATTCTGTAACTGATCCTGTTGCTTCTCAAAAATTGTATGAAGAAGCCTCCTCATCCGACAAAACTATCAAACTATACGATGGGNTCTTACATGACCTGCTCTTTGAGCCTGAACGAGATGCTATCACACAGGACATAATTCATTGGCTAAACACGAGAATATGAGGATAGCTAGGTAGTGCAGCGTGTTGAAAATATAATGAATTTTNTCAACCGACAACGAAAATTGAAGAAGCGTTTTTGTCTTAGTGGACAATTAATTTGGGGCTCTCTCTGTAGAGGAAAGAAAATTGAAGCTGAAGGCTACCTAAAATGTTGATATTCTACAATCCATGTATCAGCTT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01278	20070	22623	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01054	MGLL	EC:3.1.1.23	Glycerolipid metabolism	map00561
			Regulation of lipolysis in adipocyte	map04923
			Retrograde endocannabinoid signaling	map04723

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001278s00025612.1	PF12697.2	Abhydrolase_6	116	347	1.90E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.636
SRR1783600	control	3.842
SRR1783602	moderate drought stress	5.872
SRR1811619	moderate drought stress	6.118

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.396
DRR006520	Root Summer glycyrrhizin high producing strain	5.361
DRR006521	Root Winter glycyrrhizin high producing strain	17.057
DRR006522	Root Winter glycyrrhizin high producing strain	18.221
DRR006523	Root Summer glycyrrhizin low producing strain	2.933
DRR006524	Root Summer glycyrrhizin low producing strain	3.100
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.367
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.383

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.337
SRR2868004	Drought Stress(Tissue:root)	1.557
SRR2967015	Control (Tissue:root)	1.369

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	20.882
SRR9715740	Leave	18.027
SRR9715741	Leave	21.069
SRR9715739	Root	1.683
SRR9715742	Root	5.174
SRR9715743	Root	4.247

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.090
SRR8749028	MeJA induced 9h	3.959
SRR8749029	MeJA induced 9h	0.908
SRR8749030	Uninduced	0.411
SRR8749031	Uninduced	0.793
SRR8749032	Uninduced	1.025

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	2.411
SRR8400027	Control-Root	2.182