Gene detail

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Gene detail information of Glyur001278s00025624.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G33840.1	2.00E-129	Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial
NR	XP_007156912.1	0	hypothetical protein PHAVU_002G027700g [Phaseolus vulgaris]
COG	YP_008797747.1	7.00E-57	tyrosyl-tRNA synthetase [Candidatus Caldiarchaeum subterraneum]
trEMBL	tr\|V7CJ18\|V7CJ18_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW28906.1}

Sequence

Transcript Sequence

>Glyur001278s00025624.1
ATGTCTGACACTTCCAACGNCCCTCTCGTCAACTCGCAGGGCTTTCAATTTTCGAATTTCCATGGTGCCAGGTTGACTGCGGAGCAGAGGTTTCAGATCGTGAAGAGCATCGGGGAAGAGTGCATTCAAGAAGATGAACTCCTTAACCTCCTCGCCAACAAGCCTGAGCCTGTCTGCTATGATGTTTTCGAACCTTCTGGACNAATGCACATTGCTCAGGGTGTGATGAAAACAATCAATGTGAACAAGCTAACATCCGCTGGTTGCCGTGTCAAAATATGGATTGCTGATTTGTTTGCTAAGCTTAATAATAAGATGGAGGGAGATTTGAAGAAAATTGAGACGGTTGGCCGCTACTTGATCGAGATTTGGAAAGCCGTTGGGATGGATCTGGAAGGGGGGAAAGTTGAGTTTTTGTGGTCATCTAAAGAGATTAATGCCAGAGCTGGTGAATACTGGCCTCTTGTGTTGTGTAGTCAAATAATGGGACGGAGTGAACACAACGATTTGACTGCTNCTCAAATAATATATCCATGCNTGCAGTGTGCTGACATATTTTTCCTCAAGCGGANAGTGAATGTACTTGCCAGAGAGTATTGTGATGATATCAAGAGGAAGAACAAACCCATTATCTTATCACACCACATGTTACCTGGTCTACAGCAAGGGCAAGAGAAGATNTCAAAAAGTGACCCATTATCATCCATTTTCATGGAAGATGAGGAGGCTGAAGTGAATTTGAAAATAAAAAAGGCTTATTGCCCGCCAAAGATTGTAGAAGGAAACCCATGCTTGGAGTACATTAAATATCTTATCTTACCCTGGTTTAATGAGTCCACTGTGGAGCGTAATGCAGATAATGGGGGGAAGAAGCGTTCCTTGAGAGACATTATTCGTGAATGCGAACGGGTGGCAAAGGCACGTTCCAAGGCTAGTCAAGCAGCCCGAGACCCTGTAAGGGAACACTTCAGAAAGGACAGCAATGCTAAAGAGCTACTAAAAAGGGTCAAGGCTTACAGAGTCACCAAGTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01278	70973	74111	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01866	YARS, tyrS	EC:6.1.1.1	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

biological_process
GO:0006418 tRNA aminoacylation for protein translation

molecular_function GO:0000166 nucleotide binding GO:0004812 aminoacyl-tRNA ligase activity GO:0004831 tyrosine-tRNA ligase activity GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001278s00025624.1	PF00579.20	tRNA-synt_1b	56	322	1.70E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.670
SRR1783600	control	1.054
SRR1783602	moderate drought stress	0.435
SRR1811619	moderate drought stress	1.399

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.375
DRR006520	Root Summer glycyrrhizin high producing strain	1.059
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.044
DRR006523	Root Summer glycyrrhizin low producing strain	0.207
DRR006524	Root Summer glycyrrhizin low producing strain	0.991
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.611
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.457

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.186
SRR2868004	Drought Stress(Tissue:root)	1.746
SRR2967015	Control (Tissue:root)	1.777

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.000
SRR9715740	Leave	0.027
SRR9715741	Leave	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.051
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.023
SRR8749030	Uninduced	0.022
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.089
SRR8400027	Control-Root	0.100