Gene detail information of Glyur001279s00031469.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G12290.10Copper amine oxidase family protein
NRXP_004502050.10PREDICTED: primary amine oxidase-like [Cicer arietinum]
COGYP_005086886.13.00E-90tyramine oxidase [Pseudovibrio sp. FO-BEG1]
Swissprottr|Q8H1H9|AMO_ARATH0Primary amine oxidase (Precursor)
trEMBLtr|G7J7B0|G7J7B0_MEDTR0Copper amine oxidase, enzyme domain protein {ECO:0000313|EMBL:AES71670.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold012794713652555+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00276AOC3, AOC2, tynA EC:1.4.3.21 Glycine, serine and threonine metabolism map00260
Tyrosine metabolismmap00350
Phenylalanine metabolismmap00360
beta-Alanine metabolismmap00410
Isoquinoline alkaloid biosynthesismap00950
Tropane, piperidine and pyridine alkaloid biosynthesismap00960


Gene Ontology

biological_process

GO:0009308  amine metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0005507  copper ion binding

GO:0008131  primary amine oxidase activity

GO:0048038  quinone binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001279s00031469.1PF02727.11Cu_amine_oxidN2831666.70E-27
Glyur001279s00031469.1PF02728.11Cu_amine_oxidN31752741.10E-28
Glyur001279s00031469.1PF01179.15Cu_amine_oxid2986043.50E-94
Glyur001279s00031469.1PF01179.15Cu_amine_oxid6056594.70E-21


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control45.098
SRR1783600control45.093
SRR1783602moderate drought stress56.189
SRR1811619moderate drought stress56.661

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain50.170
DRR006520Root Summer glycyrrhizin high producing strain49.234
DRR006521Root Winter glycyrrhizin high producing strain91.485
DRR006522Root Winter glycyrrhizin high producing strain88.062
DRR006523Root Summer glycyrrhizin low producing strain68.213
DRR006524Root Summer glycyrrhizin low producing strain68.419
DRR006525Leaf Summer glycyrrhizin high producing strain176.603
DRR006526Leaf Summer glycyrrhizin high producing strain175.680

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)108.606
SRR2868004Drought Stress(Tissue:root)133.153
SRR2967015Control (Tissue:root)78.659

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave38.895
SRR9715740Leave93.495
SRR9715741Leave72.180
SRR9715739Root10.024
SRR9715742Root24.752
SRR9715743Root22.233

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h13.144
SRR8749028MeJA induced 9h18.568
SRR8749029MeJA induced 9h7.696
SRR8749030Uninduced3.024
SRR8749031Uninduced1.316
SRR8749032Uninduced1.182

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root68.769
SRR8400027Control-Root57.440

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved