Gene detail

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Gene detail information of Glyur001281s00028022.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G02850.2	6.00E-131	beta glucosidase 11
NR	XP_010112540.1	0	Beta-glucosidase 11 [Morus notabilis]
COG	YP_004449345.1	9.00E-73	beta-galactosidase [Haliscomenobacter hydrossis DSM 1100]
Swissprot	tr\|Q8S3J3\|HIUH_SOYBN	1.00E-169	Hydroxyisourate hydrolase (Precursor)
trEMBL	tr\|W9SZ74\|W9SZ74_9ROSA	0	Beta-glucosidase 11 {ECO:0000313\|EMBL:EXC33993.1}

Sequence

Transcript Sequence

>Glyur001281s00028022.2
AATAAATGCAGTACATATAGTATTATAGTTGAGAGGTGCATGCCCACAAAAAACTCGCNAAGCGAACATTGATGGAACCACAAACATCTTTGGCCTGCCTCGCTTTATTGCTACTTCTGGACTTGGCTGCGGCAGTGTTGANTGCTGATCACTACAGCAGAATTGACTTCCCAGTTGATTTTGTTTTTGGTTCAGGCACCTCTGCCTATCAGGTGGAGGGAGCTGCTAATGAAGATGGAAGAACACCTAGCATCTGGGATACCTTTGCTCATGCCGGGCATGTGCATGGAGAAAATGGAGATGTAGCTTGTGATGGGTACCACAAATATAAGATGGCAGAGGACCCGTCAATCCCAAAGGACTACAGTACTACAACAATCTCCTCAATGAACTCATCGCCAATGTTTGGGGATAGAGTCCAGTATTGGACTACTGTGAACGAGCCTAATGTCTTTGCCATAGGTGGTTATGATCAGGGAAATGCCCCACCTCACCGATGTTCTCCCCCATTTTGCGCTACAAACAGCACCAGGGGCAACTCAACATCTGAACCCTACTTAGCAGTACATCATATTTTGTTATCACATTCTTCAGCCGTGAGATTGATTATGGAACCCTTGGTGCATGGAGACTACCCCATTTCCATGAAGGCAAATGCTGGTGGAAGAATTCCAGCCTTCACAAATCGTGAATCCAAACAAGTTAAGGGTTCATACGACTTTATAGGTGTAATTCACTACAGCAGTGTTAATGTCTCTGACAATTCTAACGCNCTGAAGACAGAACTGAGAGATTTCTCTGCAGACATGGCTGCACATATATCTTTACAGAATCTATTTACAGCAGAAGAGTACCCTGTCACACCGTGGAGTTTACGAGATGTGCTGGATACATTCAGAATCCTTTATGGCAATCCTCCTATATTCATTCATGAAAATGGTCAACGGACACCGAGAAATTCATCACTTCATGACGTGTCAAGGGTGAAATACTTGCACGGATACATTGGTGGCGTTCTTGATTCCTTGAGAAATGGATCAGATATAAAGGGGTATATTGCATGGTCTTTCCTTGATCTATTCGAGTTGCTGGATGGGTACAAAGCGAGCTTTGGGCTGTACTATGTTGATCGGAATGATCCAGACTTGAGGAGATACCCAAAGCTCTCTGCAAAATGGTATAGCCAGTTTTTGAAGGGTCTGAGCTCATCTGTGGAAGGAGCTGCTAATGAAGATGGAAGAACTCCTAGTATCTGGGATACCTTTGCCCATGCTGGGTTTGCGCACGGCGATAATGGAGATGTAGCCTGCGATGGGTACCACAAATACAAGGAATCCAACCACATGCCACACTACACAACTTTGATCTTCCACAGGCACTTGATGATGAATATGGAGGTTGGAAAAGACTTCACAAACTATGCGGATGTGTGTTTTAGAGAGTTTGGGGATAGAGTCCAGTATTGGACTACTGTGAACGAGGTCAATATCTTTGCCCTAGGTGGTTATGATCAGGGAATTGCCCCACCTCAACGATGCTCTCCCCCATTTTGCCTTATGAACAGCACTCGGGGGGGCAACTCAACATATGAGTCCTACTTGGCAGCTCATCATATTTTGTTAGCACATTCTTCAGCTGTGAGATTATACAGAAGAAATTATAGGGACGAACAACATGGATTTGTTGGTATCTCTCTCTACACAATTGGTTTTTTTCCTCACACAAATACAGAGAAAGATAGGGTAGCATGTCAACGACTCGCCGATTTTTATTATGGCTGGATTATGGAACCCTTGTTACATGGAGATTATCCCATTTCCATGAAGAAAAATGCNGGAGCAAGAATCCCAACCTTCACAAGTCGTGAATCCGAACTAGTTAAGGGTTCATCTGACTTCATTGGCATAATTCACTACTCCAATTATAATGTCACAGACAATTCTGATGCCTTGAAGACAGAACTGAGAAATTTTGCTGCAGACACGGCTGCAAAGCTAGTTTCTGGATATGATCTATTTACAGAGGAAGAGTTACCTGTCACACCATGGGGTTTACAACAAGTGCTGGATACATTTAGGATCCTTTATGGCAATCCTCCTATATTCATTCATGAAAATGGTCAACGAACAGCAAGCAATTCATCACTCCATGACGTGTCAAGGGTGAAATACTTGCATGGATACATTGGTGGCGTGCTTGATTCGTTGAGAAATGGATCAAATATAAAGGGGTATATTGCATGGTCTTTCCTTGATCTATTCGAGTTGCTAGACGGATACAAATCAAGCTATGGGTTGTACTATGTTGATCGAAATGACCCAGAATTAAGGAGATACCCAAAGCTCTCTGCAAAATGGTACAGCCGGGTACAGGATACTCTGTTTGGAGCTATTGAAGAGAATGATTCATCACTTGTTTCTGTTGGCCATTTATCACAGTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01281	20531	41978	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01188	E3.2.1.21	EC:3.2.1.21	Starch and sucrose metabolism	map00500
			Cyanoamino acid metabolism	map00460
			Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001281s00028022.2	PF00232.13	Glyco_hydro_1	32	87	1.10E-19
Glyur001281s00028022.2	PF00232.13	Glyco_hydro_1	179	375	1.50E-43
Glyur001281s00028022.2	PF00232.13	Glyco_hydro_1	380	421	1.60E-10
Glyur001281s00028022.2	PF00232.13	Glyco_hydro_1	440	767	1.00E-73

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.040
SRR1783600	control	10.371
SRR1783602	moderate drought stress	12.993
SRR1811619	moderate drought stress	12.843

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.644
DRR006520	Root Summer glycyrrhizin high producing strain	12.585
DRR006521	Root Winter glycyrrhizin high producing strain	7.747
DRR006522	Root Winter glycyrrhizin high producing strain	7.911
DRR006523	Root Summer glycyrrhizin low producing strain	24.499
DRR006524	Root Summer glycyrrhizin low producing strain	24.938
DRR006525	Leaf Summer glycyrrhizin high producing strain	51.281
DRR006526	Leaf Summer glycyrrhizin high producing strain	52.313

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	48.779
SRR2868004	Drought Stress(Tissue:root)	45.181
SRR2967015	Control (Tissue:root)	32.871

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	52.709
SRR9715740	Leave	62.016
SRR9715741	Leave	65.542
SRR9715739	Root	1.776
SRR9715742	Root	5.151
SRR9715743	Root	4.915

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	32.631
SRR8749028	MeJA induced 9h	90.611
SRR8749029	MeJA induced 9h	26.048
SRR8749030	Uninduced	135.989
SRR8749031	Uninduced	95.149
SRR8749032	Uninduced	53.892

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	14.810
SRR8400027	Control-Root	13.409