Gene detail information of Glyur001281s00028024.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G02860.1 | 8.00E-122 | SPX (SYG1/Pho81/XPR1) domain-containing protein |
| NR | KHN20404.1 | 0 | E3 ubiquitin-protein ligase BAH1 [Glycine soja] |
| Swissprot | tr|Q9SRX9|BAH1_ARATH | 4.00E-158 | E3 ubiquitin-protein ligase BAH1 |
| trEMBL | tr|I1JQL7|I1JQL7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G37210.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01281 | 49109 | 52676 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001281s00028024.1 | PF03105.14 | SPX | 102 | 153 | 2.20E-08 |
| Glyur001281s00028024.1 | PF13639.1 | zf-RING_2 | 219 | 269 | 2.70E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.280 |
| SRR1783600 | control | 5.311 |
| SRR1783602 | moderate drought stress | 4.574 |
| SRR1811619 | moderate drought stress | 4.514 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.027 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.982 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.139 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.905 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.916 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.619 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.915 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.399 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 17.172 |
| SRR2868004 | Drought Stress(Tissue:root) | 20.729 |
| SRR2967015 | Control (Tissue:root) | 17.745 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 23.373 |
| SRR9715740 | Leave | 22.731 |
| SRR9715741 | Leave | 34.377 |
| SRR9715739 | Root | 3.967 |
| SRR9715742 | Root | 11.959 |
| SRR9715743 | Root | 9.231 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 42.119 |
| SRR8749028 | MeJA induced 9h | 54.012 |
| SRR8749029 | MeJA induced 9h | 67.180 |
| SRR8749030 | Uninduced | 70.691 |
| SRR8749031 | Uninduced | 82.620 |
| SRR8749032 | Uninduced | 69.481 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 12.969 |
| SRR8400027 | Control-Root | 11.526 |