Gene detail information of Glyur001282s00029609.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G22900.1 | 6.00E-151 | Galactosyl transferase GMA12/MNN10 family protein |
| NR | CAD98924.1 | 0 | galactomannan galactosyltransferase [Lotus japonicus] |
| Swissprot | tr|Q564G7|GMGT1_CYATE | 0 | Galactomannan galactosyltransferase 1 |
| trEMBL | tr|Q7X9N4|Q7X9N4_LOTJA | 0 | Galactomannan galactosyltransferase {ECO:0000313|EMBL:CAD98924.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01282 | 77037 | 78560 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT34 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001282s00029609.1 | PF05637.7 | Glyco_transf_34 | 188 | 457 | 1.10E-73 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.441 |
| SRR1783600 | control | 0.466 |
| SRR1783602 | moderate drought stress | 0.797 |
| SRR1811619 | moderate drought stress | 0.812 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.152 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.095 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.447 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.429 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.168 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.080 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.240 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.243 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.462 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.162 |
| SRR2967015 | Control (Tissue:root) | 0.337 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.642 |
| SRR9715740 | Leave | 0.484 |
| SRR9715741 | Leave | 0.369 |
| SRR9715739 | Root | 3.356 |
| SRR9715742 | Root | 1.169 |
| SRR9715743 | Root | 1.585 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.355 |
| SRR8749028 | MeJA induced 9h | 0.578 |
| SRR8749029 | MeJA induced 9h | 0.831 |
| SRR8749030 | Uninduced | 0.728 |
| SRR8749031 | Uninduced | 0.107 |
| SRR8749032 | Uninduced | 0.709 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.598 |
| SRR8400027 | Control-Root | 1.154 |