Gene detail information of Glyur001283s00033516.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G45290.12.00E-12RING/U-box superfamily protein
NRXP_004502459.11.33E-70PREDICTED: RING-H2 finger protein ATL58-like [Cicer arietinum]
Swissprottr|Q9ZU51|RHA2B_ARATH5.00E-15Probable E3 ubiquitin-protein ligase RHA2B
trEMBLtr|G7J4E6|G7J4E6_MEDTR1.00E-65Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:AES72269.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold012831389614384-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001283s00033516.1PF13639.1zf-RING_2681115.50E-17


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.541
SRR1783600control6.048
SRR1783602moderate drought stress7.863
SRR1811619moderate drought stress7.683

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.444
DRR006520Root Summer glycyrrhizin high producing strain0.660
DRR006521Root Winter glycyrrhizin high producing strain0.685
DRR006522Root Winter glycyrrhizin high producing strain0.861
DRR006523Root Summer glycyrrhizin low producing strain2.367
DRR006524Root Summer glycyrrhizin low producing strain2.034
DRR006525Leaf Summer glycyrrhizin high producing strain0.608
DRR006526Leaf Summer glycyrrhizin high producing strain0.737

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.615
SRR2868004Drought Stress(Tissue:root)47.756
SRR2967015Control (Tissue:root)31.367

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave16.379
SRR9715740Leave10.278
SRR9715741Leave45.499
SRR9715739Root18.159
SRR9715742Root12.276
SRR9715743Root9.005

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.024
SRR8749028MeJA induced 9h33.066
SRR8749029MeJA induced 9h5.300
SRR8749030Uninduced16.413
SRR8749031Uninduced25.721
SRR8749032Uninduced16.668

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root33.869
SRR8400027Control-Root26.453

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved