Gene detail information of Glyur001287s00026986.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G63950.1 | 0 | chromatin remodeling 24 |
| NR | XP_003532357.1 | 0 | PREDICTED: DNA excision repair protein ERCC-6-like [Glycine max] |
| COG | YP_438039.1 | 1.00E-72 | SNF2 family DNA/RNA helicase [Hahella chejuensis KCTC 2396] |
| Swissprot | tr|Q8W103|CHR24_ARATH | 0 | Protein CHROMATIN REMODELING 24 {ECO:0000303|PubMed:16547115} |
| trEMBL | tr|K7L475|K7L475_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G00400.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01287 | 57430 | 64121 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SNF2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001287s00026986.1 | PF00176.18 | SNF2_N | 278 | 567 | 1.80E-55 |
| Glyur001287s00026986.1 | PF00271.26 | Helicase_C | 652 | 728 | 8.60E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.057 |
| SRR1783600 | control | 4.092 |
| SRR1783602 | moderate drought stress | 4.461 |
| SRR1811619 | moderate drought stress | 4.554 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.781 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.529 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.591 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.334 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.636 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.534 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.290 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.293 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 13.257 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.205 |
| SRR2967015 | Control (Tissue:root) | 8.953 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.259 |
| SRR9715740 | Leave | 2.406 |
| SRR9715741 | Leave | 2.012 |
| SRR9715739 | Root | 0.924 |
| SRR9715742 | Root | 5.330 |
| SRR9715743 | Root | 4.640 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 18.778 |
| SRR8749028 | MeJA induced 9h | 18.733 |
| SRR8749029 | MeJA induced 9h | 12.331 |
| SRR8749030 | Uninduced | 21.163 |
| SRR8749031 | Uninduced | 41.931 |
| SRR8749032 | Uninduced | 43.940 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 15.517 |
| SRR8400027 | Control-Root | 14.270 |