Gene detail information of Glyur001287s00026987.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G39450.1 | 2.00E-146 | F-box family protein |
| NR | KHN17395.1 | 0 | F-box protein [Glycine soja] |
| Swissprot | tr|Q8RWD6|FB271_ARATH | 0 | F-box protein At5g39450 |
| trEMBL | tr|K7KR77|K7KR77_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G32750.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01287 | 65632 | 68936 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.936 |
| SRR1783600 | control | 8.005 |
| SRR1783602 | moderate drought stress | 7.672 |
| SRR1811619 | moderate drought stress | 7.470 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.940 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.785 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.402 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.056 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 33.022 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 33.071 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.772 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.613 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 16.684 |
| SRR2868004 | Drought Stress(Tissue:root) | 23.332 |
| SRR2967015 | Control (Tissue:root) | 20.844 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 31.981 |
| SRR9715740 | Leave | 36.035 |
| SRR9715741 | Leave | 55.801 |
| SRR9715739 | Root | 8.623 |
| SRR9715742 | Root | 25.547 |
| SRR9715743 | Root | 20.340 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.922 |
| SRR8749028 | MeJA induced 9h | 18.655 |
| SRR8749029 | MeJA induced 9h | 7.192 |
| SRR8749030 | Uninduced | 10.917 |
| SRR8749031 | Uninduced | 8.578 |
| SRR8749032 | Uninduced | 4.825 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 13.505 |
| SRR8400027 | Control-Root | 17.851 |