Gene detail information of Glyur001288s00027993.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G52820.12.00E-115WD-40 repeat family protein / notchless protein, putative
NRXP_003548103.11.40E-163PREDICTED: notchless protein homolog [Glycine max]
COGYP_005066864.12.00E-30serine/threonine protein kinase with WD-40 repeats [Arthrospira platensis NIES-39]
Swissprottr|Q9FLX9|NLE1_ARATH2.00E-141Notchless protein homolog
trEMBLtr|I1MP51|I1MP51_SOYBN5.00E-164Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G27980.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold012885664907+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001288s00027993.1PF00400.27WD4060920.00032
Glyur001288s00027993.1PF00400.27WD40971335.10E-11
Glyur001288s00027993.1PF00400.27WD401372113.30E-05
Glyur001288s00027993.1PF00400.27WD402512670.0028
Glyur001288s00027993.1PF00400.27WD402723082.50E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control19.577
SRR1783600control19.947
SRR1783602moderate drought stress24.543
SRR1811619moderate drought stress24.912

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain23.778
DRR006520Root Summer glycyrrhizin high producing strain24.547
DRR006521Root Winter glycyrrhizin high producing strain33.006
DRR006522Root Winter glycyrrhizin high producing strain31.348
DRR006523Root Summer glycyrrhizin low producing strain21.347
DRR006524Root Summer glycyrrhizin low producing strain23.613
DRR006525Leaf Summer glycyrrhizin high producing strain10.375
DRR006526Leaf Summer glycyrrhizin high producing strain10.348

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)27.785
SRR2868004Drought Stress(Tissue:root)27.339
SRR2967015Control (Tissue:root)25.244

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave19.421
SRR9715740Leave20.431
SRR9715741Leave23.737
SRR9715739Root12.312
SRR9715742Root25.709
SRR9715743Root23.398

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h25.204
SRR8749028MeJA induced 9h15.017
SRR8749029MeJA induced 9h18.947
SRR8749030Uninduced10.452
SRR8749031Uninduced7.719
SRR8749032Uninduced11.893

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root23.467
SRR8400027Control-Root19.520

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved