Gene detail

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Gene detail information of Glyur001288s00027994.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G11945.1	1.00E-128	homogentisate prenyltransferase
NR	XP_004509919.1	0	PREDICTED: homogentisate phytyltransferase 2, chloroplastic-like [Cicer arietinum]
COG	YP_007063925.1	3.00E-56	homogentisate phytyltransferase [Calothrix sp. PCC 7507]
Swissprot	tr\|Q1ACB3\|HSTC_ARATH	4.00E-177	Homogentisate solanesyltransferase, chloroplastic (Precursor)
trEMBL	tr\|A0A097PHQ9\|A0A097PHQ9_MEDSA	0	Homogentisate solanesyltransferase {ECO:0000313\|EMBL:AIU47060.1}

Sequence

Transcript Sequence

>Glyur001288s00027994.1
CTGAAAAAGCAAACATATTTTGAAGCAGCGGTAGAATCTGACCCCACAAGGTTGTGAAGCTGTGAGCTCCGACACCGTTTTTTGTGTGTCTGAGATTGCAAGTGTTTTGCTTTGCTTTGCTCTCTTCGGCTCCGCATGGAGCTCTCTTCTTCTTCCTCAACTTCACTTCATGTTCGTCCCATAATTCCCACAACATGGAATTCCCCTCACTTTCTGAAAGTACCCACTAAGGTCACCACGCCAAAGCCTTCTTCTCTTTTGTTCTTTGGATTTTCCAAACACTACCCCAGTTCAATTGGGTTGTACCACCATCACAGGAACTCCTCAAATTCTGTTCCAAAGAGACGACAGCAGAGACCCGTTTCCATCAGGGCCTGCAGCGAAGTTGGAGCTGCTGGATCTGATCGTCCATTTGCTGACAAAGTTTTAGATTTAAAAGATGCNTGCTGGAGATTTTTAAGGCCACATACTATACGTGGTACAGCACTAGGTTCTGTTGCTTTGGTGTCAAGAGCATTGATTGAGAACTCAAATATGATAAAGTGGTCTCTTTTGTTCAAAGCATTCTCTGGCCTCTTTGCCCTGATTTGTGGGAATGGTTATATAGTTGGCATCAATCAAATCTATGACATTAGCATTGACAAGGTAAACAAACCTTATTTACCTATAGCTGCAGGAGATCTTTCTGTCCAATCCGCATGGTTCTTGGTTGCATTTTTTGCAGCAGCTGGCCTGTTGATTGTGGGATTGAACTTTGGGCCCTTTATTTTTTCTCTTTACACACTTGGNCTTTTTCTTGGTACTATCTATTCCGTTCCTCCGTTTAGAATGAAACGCTTTCCTGTTGCAGCATTTCTTATCATTGCCACGGTACGAGGTTTTCTGCTTAACTTTGGTGTGTACTATGCCACTAGAGCTGCTCTTGGACTTGCTTTTGAGTGGAGCTCTCCTGTGGTTTTTATCACAACTTTCGTAACATTTTTTGCATTGGTAATTGCTATAACAAAAGATCTTCCGGATGTTGAAGGAGATCGCAGGTATCAGATATCGACCTTTGCTACAAAATTAGGAGTTCGGAACATTGCCTTTCTTGGTTCTGGAATTTTGCTGATGAACTATGTTGCTACCATATTGGCAGCAATTTATATGCCACAGACACTGATATTGGAAAAGGAAAATTATACCAAGGAAGCAATATCAGGATTCTATCGATTCATATGGAATCTGTTCTATGCTGAGTATGCAATATTTCCTTTCATCTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01288	5821	11573	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K12501	HST	EC:2.5.1.117	Ubiquinone and other terpenoid-quinone biosynthesis	map00130

Gene Ontology

cellular_component
GO:0016021 integral component of membrane

molecular_function GO:0004659 prenyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001288s00027994.1	PF01040.13	UbiA	122	339	1.60E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.121
SRR1783600	control	10.186
SRR1783602	moderate drought stress	7.778
SRR1811619	moderate drought stress	7.581

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.123
DRR006520	Root Summer glycyrrhizin high producing strain	6.414
DRR006521	Root Winter glycyrrhizin high producing strain	5.860
DRR006522	Root Winter glycyrrhizin high producing strain	5.830
DRR006523	Root Summer glycyrrhizin low producing strain	7.964
DRR006524	Root Summer glycyrrhizin low producing strain	7.772
DRR006525	Leaf Summer glycyrrhizin high producing strain	65.064
DRR006526	Leaf Summer glycyrrhizin high producing strain	65.221

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	13.528
SRR2868004	Drought Stress(Tissue:root)	11.661
SRR2967015	Control (Tissue:root)	10.041

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	66.037
SRR9715740	Leave	88.724
SRR9715741	Leave	61.679
SRR9715739	Root	4.095
SRR9715742	Root	5.982
SRR9715743	Root	5.916

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.496
SRR8749028	MeJA induced 9h	4.180
SRR8749029	MeJA induced 9h	6.005
SRR8749030	Uninduced	5.039
SRR8749031	Uninduced	3.688
SRR8749032	Uninduced	5.954

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	15.816
SRR8400027	Control-Root	13.129