Gene detail information of Glyur001292s00040215.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G15290.19.00E-813-hydroxyacyl-CoA dehydrogenase family protein
NRNP_001234958.11.27E-136peroxisomal 3-hydroxyacyl-CoA dehydrogenase-like protein [Glycine max]
COGYP_002317076.19.00E-833-hydroxyacyl-CoA dehydrogenase [Anoxybacillus flavithermus WK1]
Swissprottr|Q9ZPI6|AIM1_ARATH2.00E-213-hydroxyacyl-CoA dehydrogenase
trEMBLtr|B0M194|B0M194_SOYBN5.00E-137Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G39750.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold012921528917943-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00074paaH, hbd, fadB, mmgB EC:1.1.1.157 Butanoate metabolism map00650
Phenylalanine metabolismmap00360
Benzoate degradationmap00362


Gene Ontology

biological_process

GO:0006631  fatty acid metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003857  3-hydroxyacyl-CoA dehydrogenase activity

GO:0016491  oxidoreductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001292s00040215.2PF02737.133HCDH_N31861.00E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.546
SRR1783600control18.471
SRR1783602moderate drought stress71.478
SRR1811619moderate drought stress70.582

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain45.671
DRR006520Root Summer glycyrrhizin high producing strain44.493
DRR006521Root Winter glycyrrhizin high producing strain89.133
DRR006522Root Winter glycyrrhizin high producing strain84.824
DRR006523Root Summer glycyrrhizin low producing strain42.902
DRR006524Root Summer glycyrrhizin low producing strain42.376
DRR006525Leaf Summer glycyrrhizin high producing strain9.900
DRR006526Leaf Summer glycyrrhizin high producing strain10.646

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)43.214
SRR2868004Drought Stress(Tissue:root)68.967
SRR2967015Control (Tissue:root)71.727

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave43.001
SRR9715740Leave42.214
SRR9715741Leave52.419
SRR9715739Root85.865
SRR9715742Root57.921
SRR9715743Root63.058

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h29.573
SRR8749028MeJA induced 9h67.755
SRR8749029MeJA induced 9h26.962
SRR8749030Uninduced105.566
SRR8749031Uninduced87.053
SRR8749032Uninduced97.006

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root69.889
SRR8400027Control-Root62.632

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved