Gene detail

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Gene detail information of Glyur001296s00027379.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G66880.1	1.00E-85	Protein kinase superfamily protein
NR	KHN20769.1	0	Putative serine/threonine-protein kinase [Glycine soja]
COG	YP_004463009.1	2.00E-24	serine/threonine protein kinase with PASTA sensor(s) [Mahella australiensis 50-1 BON]
Swissprot	tr\|P0C5E2\|Y1839_ARATH	1.00E-95	Probable serine/threonine-protein kinase At1g18390 (Precursor)
trEMBL	tr\|A0A072UMA8\|A0A072UMA8_MEDTR	0	Tyrosine kinase family protein {ECO:0000313\|EMBL:KEH26985.1}

Sequence

Transcript Sequence

>Glyur001296s00027379.1
ATCTTCTTGAGATCCCAAGTTGACTAGAGATACGAATAAAATAGTCCTTGTAAGGACCGGGTTGAATTGGGCCTAAGCTCAAATTATGAGATGATATATTTATATATATCTAATATAATATAATTTTGGTTAACAAACTTGTGCTGCTCATGTTTGTTTACTACTCTTAGAACCTGGAAATATCTTGTTGAAATCCTATGCCGACTAGAAATATGGATAAAGTAGTCCTTATAAGGCTTGGGTTGAGTAGTCCTCCTATGTGATGGACTGATGGTATTTGTACAATTAATGATTATGTCGAATATGATTTCACTGTAGACATGATTTATGACCGATGGGATATGGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTAATGATTATGTCGAATTCTTTTGTACAAGTCATATTTTTCTTTCATCTGATTAATCTACTTTGTATCCTATTTGAACATGAATAAGACCTCATAAAACTCACTAACCATACATAGAAATTTTGAAATTCTACTTAGCCTTTTGATTCCCTCATTCTGCATCTGCATCCCAGCGACGAGCAATAACCCCATGAGAGGCTGAGGTAATGGGGTGGGGGGATCTCTTCTTGTGCTGCTTCCCCAGCACTTCTTGTGACACATTTCCGAAGCACACAAAGTCCAAGTGGCAAATCTTCCCCTATAGACAACTCGCAAAAGCCACAAATAATTTTGATCATATTCTTGAAAAGAGAGGATCTGCCACAATATATTATGGAAAACTTGGGGATGGACGTGAGATTGCAGTCCAGCGTTTTAGTGAACACAAGTGCCATATATTGCAACATTTTCTCAGTGAAACTGTTATCCTAAATTACATGCCCCACAAAAACCTTGTGCCAATTTACGGGTGTGCCACTCATCAAAAGGAATATCTGCTAGTACATGAGTACCTACGCAATGGGACTCTTGCTGCTGAACTTCAAGGCAAAGCATTAGAAAGGGTAACATTACCTTGGCCTACCCGATTGGATATTGCCATTGATACTGCAAGTGCATTGGACTATCTTCACTATAATGGCATCATCCACCGTGATGTAAAGTCCAGCAACATTATCTTTGATAGGAATTTTTGTGCTAAAGTTGCCAACTTTCATTTGTCACGTAAACTTCCTGAAGGAGTTCCTGCTTATGAAACCCATGTTACAAGAGATATAATAGGAACACGTGGTTATCTAGACCCAGAGTATATGTTAAAAGGCTTGCTTAGCATAAAAAATGATGTTTATAGTTTTGGTGTGGTGTTGTGTGAGCTTTTATCATCGATGCTTGTGAAACATTGGGTTCGGAATGAAGAGGATAGTCTTGCTACCCTTTTAAGCAAAAAAATTGAAAACCAAGCTTTGGAGGAGCTGTTGGATCCAAGACTTGGCTTCCAATTAGATCCTAAGATCAAGCAGATGATGACTGCGGCGGCTGAGCTCGCCTTTCGGTGCTTGCAATGTCCACAAGANTTAAGGCCTTACATGGAACAGGTGCTAGAGACTCTCAATGGCATAAAGCAAGNGAGATATGAAACAAACCCAACAAAAGCTTTCACAATCTTCCACCCTGCTGAACTTGAAGTAGCTACTAACCATTTTGATACTTGCCTTGGAAAGGGAGGATTTGGCAGAGTCTACTATGGAAAACTTAAAGACGGGAGAGAGGTTGCAATAAAACGTTTCCATGAGGAGACAGAAAAAACCATTAAGCAATTCATGAAAGAAGTTGAGGTCTTATGTCTCTTGCACCATCAAAATCTGGTTTCACTTTATGGCTGCAGTTCTCGTCATAGCAGCAAGCACATGCTAGTGTANGAGTACATCTCCAATGGCACTCTCTCTGAGCATCTTCGTGGATCGTCTTCTTGTGTTGGTAAACTTAAGTTTAGTAAACTACCATGGCTTACGAGATTGAATATTGCCATTGAGACTNCAATTGCCCTGGTATATCTTCACAACTCTGGTGTCATCCACCGTGATGTAAAAGGAAGCAATATTCTGTTAGATGAAAATTTTACTGTTGAAGTTGCTGATTTTGGACTCTCAAGGTTTCTACCAGATTATGTTACTCATGTTTCAACCAATCCAGTGGGAACTCATGCTTACATAGATCCAGACTATTATGAATCTGGAAGGGTCAGTGAAAAGAGTGATGTCTATAGCTTTGGAGTTGTCTTGTTTGAGCTTATATCATCCAAATCCCCAAGTTTAATGGAAGGCACAGAACATGTCACTATTGCACAATTTGCAATGAGTAAAATCTTAAATAAGGCATTAGAGGAGCTTGTGGATCCTAGCCTTGGGTTTGATGCTGACAAAAACATAATGGAAATGATAACAGCAGTGGCAGAGTTAGCATTTCAGTGTGTGCAGTGTCCCAAGGAACTCAGGCCATCCATGAAACAGGTGCTAGAGACTCTAGAGGGCATAAAGAAGGGGACATGGGGATTCAGCCAGATAACATAGCATACTCTTAAGCCATTTATATCAAACCATTGATTTGGTTCACTTTTGTTTTTTCTCTCTGTTATTTGATTGTCAAATCTGAGTGTGGAAACTAAAATTTCTT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01296	14373	18769	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.5.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001296s00027379.1	PF00069.20	Pkinase	60	312	7.40E-34
Glyur001296s00027379.1	PF07714.12	Pkinase_Tyr	345	619	1.30E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.784
SRR1783600	control	0.779
SRR1783602	moderate drought stress	0.148
SRR1811619	moderate drought stress	0.090

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.106
DRR006520	Root Summer glycyrrhizin high producing strain	22.222
DRR006521	Root Winter glycyrrhizin high producing strain	3.913
DRR006522	Root Winter glycyrrhizin high producing strain	3.780
DRR006523	Root Summer glycyrrhizin low producing strain	39.313
DRR006524	Root Summer glycyrrhizin low producing strain	38.019
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.153
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.738

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.453
SRR2868004	Drought Stress(Tissue:root)	2.821
SRR2967015	Control (Tissue:root)	5.020

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	31.315
SRR9715740	Leave	0.005
SRR9715741	Leave	7.931
SRR9715739	Root	0.019
SRR9715742	Root	0.047
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.513
SRR8749028	MeJA induced 9h	13.310
SRR8749029	MeJA induced 9h	11.475
SRR8749030	Uninduced	12.837
SRR8749031	Uninduced	11.863
SRR8749032	Uninduced	7.688

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	6.334
SRR8400027	Control-Root	14.914