Gene detail information of Glyur001297s00038236.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G49430.15.00E-117long-chain acyl-CoA synthetase 2
NRXP_004498184.10PREDICTED: long chain acyl-CoA synthetase 2-like isoform X2 [Cicer arietinum]
COGNP_217106.19.00E-40Probable fatty-acid-CoA ligase FadD9 (fatty-acid-CoA synthetase) (fatty-acid-CoA synthase) [Mycobacterium tuberculosis H37Rv]
Swissprottr|Q9XIA9|LACS2_ARATH6.00E-144Long chain acyl-CoA synthetase 2
trEMBLtr|A0A072VRL7|A0A072VRL7_MEDTR0Long-chain fatty acyl CoA ligase {ECO:0000313|EMBL:KEH40770.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold012972900936150+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01897ACSL, fadD EC:6.2.1.3 Fatty acid metabolism map01212
Fatty acid biosynthesismap00061
Fatty acid degradationmap00071
Peroxisomemap04146
Quorum sensingmap02024
Adipocytokine signaling pathwaymap04920
PPAR signaling pathwaymap03320


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001297s00038236.1PF00501.23AMP-binding493103.70E-54
Glyur001297s00038236.1PF00501.23AMP-binding3134197.30E-25


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.715
SRR1783600control14.795
SRR1783602moderate drought stress13.260
SRR1811619moderate drought stress12.962

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.000
DRR006520Root Summer glycyrrhizin high producing strain0.030
DRR006521Root Winter glycyrrhizin high producing strain0.067
DRR006522Root Winter glycyrrhizin high producing strain0.065
DRR006523Root Summer glycyrrhizin low producing strain0.183
DRR006524Root Summer glycyrrhizin low producing strain0.195
DRR006525Leaf Summer glycyrrhizin high producing strain11.243
DRR006526Leaf Summer glycyrrhizin high producing strain10.892

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)78.599
SRR2868004Drought Stress(Tissue:root)36.181
SRR2967015Control (Tissue:root)31.973

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.204
SRR9715740Leave3.838
SRR9715741Leave9.385
SRR9715739Root3.632
SRR9715742Root8.632
SRR9715743Root7.769

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.203
SRR8749028MeJA induced 9h0.398
SRR8749029MeJA induced 9h0.304
SRR8749030Uninduced1.507
SRR8749031Uninduced2.634
SRR8749032Uninduced0.675

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root138.381
SRR8400027Control-Root155.908

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved