Gene detail information of Glyur001298s00033396.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G09560.3 | 0 | Lipin family protein |
| NR | XP_003541397.1 | 0 | PREDICTED: phosphatidate phosphatase LPIN3-like [Glycine max] |
| Swissprot | tr|Q9SF47|PAH1_ARATH | 0 | Phosphatidate phosphatase PAH1 |
| trEMBL | tr|I1LYX3|I1LYX3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G19730.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01298 | 41837 | 49809 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K15728 | LPIN | EC:3.1.3.4 | Glycerolipid metabolism | map00561 |
| Glycerophospholipid metabolism | map00564 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001298s00033396.1 | PF04571.9 | Lipin_N | 1 | 108 | 8.50E-37 |
| Glyur001298s00033396.1 | PF08235.8 | LNS2 | 695 | 755 | 6.20E-18 |
| Glyur001298s00033396.1 | PF08235.8 | LNS2 | 782 | 823 | 2.00E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.953 |
| SRR1783600 | control | 9.104 |
| SRR1783602 | moderate drought stress | 13.919 |
| SRR1811619 | moderate drought stress | 13.920 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.225 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.054 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.762 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.313 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.168 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.432 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.444 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.547 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 16.705 |
| SRR2868004 | Drought Stress(Tissue:root) | 18.290 |
| SRR2967015 | Control (Tissue:root) | 21.669 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 30.009 |
| SRR9715740 | Leave | 31.706 |
| SRR9715741 | Leave | 41.775 |
| SRR9715739 | Root | 4.126 |
| SRR9715742 | Root | 21.124 |
| SRR9715743 | Root | 17.445 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.243 |
| SRR8749028 | MeJA induced 9h | 11.088 |
| SRR8749029 | MeJA induced 9h | 5.740 |
| SRR8749030 | Uninduced | 12.685 |
| SRR8749031 | Uninduced | 13.344 |
| SRR8749032 | Uninduced | 12.413 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 26.500 |
| SRR8400027 | Control-Root | 19.155 |